Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Gm8668-201ENSMUST00000120559 1447 ntBASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 Gm27000-201ENSMUST00000182943 842 ntBASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3bQ3ULL6 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Upf3bQ3ULL6 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3bQ3ULL6 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3bQ3ULL6 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3bQ3ULL6 Gm7292-201ENSMUST00000194706 2527 ntBASIC18.09■□□□□ 0.49
Upf3bQ3ULL6 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3bQ3ULL6 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3bQ3ULL6 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3bQ3ULL6 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3bQ3ULL6 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC18.09■□□□□ 0.49
Upf3bQ3ULL6 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Upf3bQ3ULL6 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Upf3bQ3ULL6 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Upf3bQ3ULL6 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC18.09■□□□□ 0.49
Upf3bQ3ULL6 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Upf3bQ3ULL6 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC18.08■□□□□ 0.49
Upf3bQ3ULL6 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Upf3bQ3ULL6 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
Upf3bQ3ULL6 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Upf3bQ3ULL6 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Upf3bQ3ULL6 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
Upf3bQ3ULL6 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Upf3bQ3ULL6 Gm16061-201ENSMUST00000122167 857 ntBASIC18.08■□□□□ 0.48
Upf3bQ3ULL6 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC18.08■□□□□ 0.48
Upf3bQ3ULL6 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Upf3bQ3ULL6 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Upf3bQ3ULL6 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Upf3bQ3ULL6 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Upf3bQ3ULL6 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Upf3bQ3ULL6 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Upf3bQ3ULL6 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3bQ3ULL6 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Upf3bQ3ULL6 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3bQ3ULL6 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3bQ3ULL6 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
Upf3bQ3ULL6 Gm13474-201ENSMUST00000122466 815 ntBASIC18.07■□□□□ 0.48
Upf3bQ3ULL6 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC18.07■□□□□ 0.48
Upf3bQ3ULL6 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3bQ3ULL6 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC18.07■□□□□ 0.48
Upf3bQ3ULL6 Gm18959-201ENSMUST00000208954 655 ntBASIC18.07■□□□□ 0.48
Upf3bQ3ULL6 Gm7370-201ENSMUST00000219471 767 ntBASIC18.07■□□□□ 0.48
Upf3bQ3ULL6 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3bQ3ULL6 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3bQ3ULL6 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3bQ3ULL6 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Upf3bQ3ULL6 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Upf3bQ3ULL6 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Upf3bQ3ULL6 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms