Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC17.77■□□□□ 0.43
Upf3aQ3ULJ3 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Upf3aQ3ULJ3 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Upf3aQ3ULJ3 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Upf3aQ3ULJ3 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Upf3aQ3ULJ3 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Upf3aQ3ULJ3 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Upf3aQ3ULJ3 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Gm43514-201ENSMUST00000198852 424 ntBASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Gm6443-201ENSMUST00000203599 874 ntBASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3aQ3ULJ3 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Upf3aQ3ULJ3 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Upf3aQ3ULJ3 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
Upf3aQ3ULJ3 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 AC153794.1-201ENSMUST00000169148 126 ntBASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 AC108846.1-201ENSMUST00000214531 513 ntBASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 AC159301.1-201ENSMUST00000225130 1182 ntBASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms