Protein–RNA interactions for Protein: Q3UDK1

Trafd1, TRAF-type zinc finger domain-containing protein 1, mousemouse

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trafd1Q3UDK1 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trafd1Q3UDK1 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trafd1Q3UDK1 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trafd1Q3UDK1 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trafd1Q3UDK1 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
Trafd1Q3UDK1 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trafd1Q3UDK1 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC16.85■□□□□ 0.29
Trafd1Q3UDK1 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
Trafd1Q3UDK1 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trafd1Q3UDK1 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC16.85■□□□□ 0.29
Trafd1Q3UDK1 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trafd1Q3UDK1 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trafd1Q3UDK1 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trafd1Q3UDK1 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
Trafd1Q3UDK1 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trafd1Q3UDK1 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Gm17661-201ENSMUST00000170317 270 ntBASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 H2-K2-201ENSMUST00000174250 1049 ntBASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trafd1Q3UDK1 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Trafd1Q3UDK1 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
Trafd1Q3UDK1 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
Trafd1Q3UDK1 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trafd1Q3UDK1 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trafd1Q3UDK1 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trafd1Q3UDK1 Gm9694-201ENSMUST00000193347 1189 ntBASIC16.83■□□□□ 0.28
Trafd1Q3UDK1 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC16.83■□□□□ 0.28
Trafd1Q3UDK1 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC16.83■□□□□ 0.28
Trafd1Q3UDK1 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Trafd1Q3UDK1 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trafd1Q3UDK1 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trafd1Q3UDK1 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC16.83■□□□□ 0.28
Trafd1Q3UDK1 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
Trafd1Q3UDK1 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trafd1Q3UDK1 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trafd1Q3UDK1 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trafd1Q3UDK1 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Gm42918-201ENSMUST00000199249 1580 ntBASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Gm10698-201ENSMUST00000182663 604 ntBASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Gm37025-201ENSMUST00000195159 829 ntBASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Gm20628-201ENSMUST00000177363 3215 ntBASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 AL590614.2-201ENSMUST00000225374 1937 ntBASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trafd1Q3UDK1 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trafd1Q3UDK1 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trafd1Q3UDK1 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Trafd1Q3UDK1 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC16.81■□□□□ 0.28
Trafd1Q3UDK1 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trafd1Q3UDK1 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trafd1Q3UDK1 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC16.81■□□□□ 0.28
Trafd1Q3UDK1 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trafd1Q3UDK1 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Trafd1Q3UDK1 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trafd1Q3UDK1 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trafd1Q3UDK1 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trafd1Q3UDK1 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trafd1Q3UDK1 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trafd1Q3UDK1 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms