Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Col8a1Q00780 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col8a1Q00780 Gm1818-201ENSMUST00000169406 1184 ntBASIC14.39□□□□□ -0.11
Col8a1Q00780 Gm7063-201ENSMUST00000186840 981 ntBASIC14.39□□□□□ -0.11
Col8a1Q00780 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col8a1Q00780 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC14.39□□□□□ -0.11
Col8a1Q00780 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC14.39□□□□□ -0.11
Col8a1Q00780 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC14.39□□□□□ -0.11
Col8a1Q00780 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col8a1Q00780 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col8a1Q00780 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col8a1Q00780 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col8a1Q00780 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col8a1Q00780 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col8a1Q00780 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col8a1Q00780 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col8a1Q00780 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col8a1Q00780 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col8a1Q00780 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col8a1Q00780 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC14.38□□□□□ -0.11
Col8a1Q00780 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC14.38□□□□□ -0.11
Col8a1Q00780 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Mir5131-201ENSMUST00000175426 93 ntBASIC14.38□□□□□ -0.11
Col8a1Q00780 Gm29791-202ENSMUST00000207888 369 ntBASIC14.38□□□□□ -0.11
Col8a1Q00780 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col8a1Q00780 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC14.38□□□□□ -0.11
Col8a1Q00780 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col8a1Q00780 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col8a1Q00780 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col8a1Q00780 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col8a1Q00780 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
Col8a1Q00780 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col8a1Q00780 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col8a1Q00780 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC14.37□□□□□ -0.11
Col8a1Q00780 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col8a1Q00780 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC14.37□□□□□ -0.11
Col8a1Q00780 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC14.37□□□□□ -0.11
Col8a1Q00780 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC14.37□□□□□ -0.11
Col8a1Q00780 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
Col8a1Q00780 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Col8a1Q00780 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col8a1Q00780 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Col8a1Q00780 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col8a1Q00780 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col8a1Q00780 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Col8a1Q00780 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Col8a1Q00780 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Col8a1Q00780 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC14.36□□□□□ -0.11
Col8a1Q00780 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col8a1Q00780 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col8a1Q00780 Grk6-206ENSMUST00000224995 2971 ntBASIC14.36□□□□□ -0.11
Col8a1Q00780 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col8a1Q00780 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col8a1Q00780 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col8a1Q00780 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col8a1Q00780 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col8a1Q00780 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col8a1Q00780 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col8a1Q00780 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col8a1Q00780 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Col8a1Q00780 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col8a1Q00780 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col8a1Q00780 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col8a1Q00780 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC14.36□□□□□ -0.11
Col8a1Q00780 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col8a1Q00780 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC14.36□□□□□ -0.11
Col8a1Q00780 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col8a1Q00780 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Col8a1Q00780 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Col8a1Q00780 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Gm12644-201ENSMUST00000119935 606 ntBASIC14.35□□□□□ -0.11
Col8a1Q00780 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC14.35□□□□□ -0.11
Col8a1Q00780 Gm27702-201ENSMUST00000184512 56 ntBASIC14.35□□□□□ -0.11
Col8a1Q00780 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Col8a1Q00780 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 89.8 ms