Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox1P53783 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox1P53783 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox1P53783 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox1P53783 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox1P53783 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Sox1P53783 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Sox1P53783 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Sox1P53783 Gm4535-201ENSMUST00000182274 558 ntBASIC17.26■□□□□ 0.35
Sox1P53783 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC17.26■□□□□ 0.35
Sox1P53783 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.26■□□□□ 0.35
Sox1P53783 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox1P53783 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox1P53783 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox1P53783 Gm10355-201ENSMUST00000097146 517 ntBASIC17.26■□□□□ 0.35
Sox1P53783 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox1P53783 Gm18688-201ENSMUST00000204695 1859 ntBASIC17.26■□□□□ 0.35
Sox1P53783 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox1P53783 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox1P53783 Gm38308-201ENSMUST00000194934 1809 ntBASIC17.26■□□□□ 0.35
Sox1P53783 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox1P53783 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox1P53783 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Sox1P53783 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox1P53783 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
Sox1P53783 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox1P53783 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox1P53783 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Sox1P53783 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox1P53783 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox1P53783 Mir3113-201ENSMUST00000175478 76 ntBASIC17.25■□□□□ 0.35
Sox1P53783 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Sox1P53783 Gm6550-201ENSMUST00000187574 993 ntBASIC17.25■□□□□ 0.35
Sox1P53783 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox1P53783 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox1P53783 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Sox1P53783 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox1P53783 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Sox1P53783 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Sox1P53783 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Sox1P53783 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC17.24■□□□□ 0.35
Sox1P53783 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC17.24■□□□□ 0.35
Sox1P53783 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC17.24■□□□□ 0.35
Sox1P53783 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC17.24■□□□□ 0.35
Sox1P53783 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.24■□□□□ 0.35
Sox1P53783 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Sox1P53783 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 Phf7-203ENSMUST00000226565 1971 ntBASIC17.24■□□□□ 0.35
Sox1P53783 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC17.24■□□□□ 0.35
Sox1P53783 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox1P53783 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC17.23■□□□□ 0.35
Sox1P53783 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
Sox1P53783 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox1P53783 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox1P53783 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC17.23■□□□□ 0.35
Sox1P53783 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC17.23■□□□□ 0.35
Sox1P53783 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Sox1P53783 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC17.23■□□□□ 0.35
Sox1P53783 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.23■□□□□ 0.35
Sox1P53783 Gm20949-201ENSMUST00000206478 952 ntBASIC17.23■□□□□ 0.35
Sox1P53783 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox1P53783 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox1P53783 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox1P53783 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox1P53783 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox1P53783 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox1P53783 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox1P53783 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox1P53783 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Sox1P53783 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox1P53783 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sox1P53783 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox1P53783 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox1P53783 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Sox1P53783 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC17.22■□□□□ 0.35
Sox1P53783 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sox1P53783 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sox1P53783 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sox1P53783 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Sox1P53783 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox1P53783 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox1P53783 Gm15500-202ENSMUST00000071641 1019 ntBASIC17.22■□□□□ 0.35
Sox1P53783 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Sox1P53783 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox1P53783 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms