Protein–RNA interactions for Protein: P23440

Pde6b, Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta, mousemouse

Predictions only

Length 856 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pde6bP23440 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Pde6bP23440 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC18.41■□□□□ 0.54
Pde6bP23440 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Pde6bP23440 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC18.41■□□□□ 0.54
Pde6bP23440 Gm18669-201ENSMUST00000216049 778 ntBASIC18.41■□□□□ 0.54
Pde6bP23440 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
Pde6bP23440 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Pde6bP23440 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Pde6bP23440 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Pde6bP23440 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Pde6bP23440 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Pde6bP23440 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Pde6bP23440 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC18.4■□□□□ 0.54
Pde6bP23440 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pde6bP23440 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pde6bP23440 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC18.4■□□□□ 0.54
Pde6bP23440 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pde6bP23440 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC18.4■□□□□ 0.54
Pde6bP23440 Gm37722-201ENSMUST00000193757 208 ntBASIC18.4■□□□□ 0.54
Pde6bP23440 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pde6bP23440 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pde6bP23440 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Pde6bP23440 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pde6bP23440 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.4■□□□□ 0.54
Pde6bP23440 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pde6bP23440 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC18.4■□□□□ 0.54
Pde6bP23440 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pde6bP23440 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pde6bP23440 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pde6bP23440 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pde6bP23440 Gm19721-201ENSMUST00000195284 1764 ntBASIC18.4■□□□□ 0.54
Pde6bP23440 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Pde6bP23440 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Pde6bP23440 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Pde6bP23440 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Pde6bP23440 Gm7292-201ENSMUST00000194706 2527 ntBASIC18.39■□□□□ 0.53
Pde6bP23440 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC18.39■□□□□ 0.53
Pde6bP23440 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC18.39■□□□□ 0.53
Pde6bP23440 AC122351.1-201ENSMUST00000220467 126 ntBASIC18.39■□□□□ 0.53
Pde6bP23440 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Pde6bP23440 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Pde6bP23440 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Pde6bP23440 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Pde6bP23440 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.38■□□□□ 0.53
Pde6bP23440 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC18.38■□□□□ 0.53
Pde6bP23440 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Pde6bP23440 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Pde6bP23440 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Pde6bP23440 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Pde6bP23440 Mir770-201ENSMUST00000103252 94 ntBASIC18.38■□□□□ 0.53
Pde6bP23440 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Pde6bP23440 Gm11860-201ENSMUST00000122346 1010 ntBASIC18.38■□□□□ 0.53
Pde6bP23440 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC18.38■□□□□ 0.53
Pde6bP23440 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Pde6bP23440 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Pde6bP23440 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Pde6bP23440 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Pde6bP23440 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Pde6bP23440 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Pde6bP23440 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Pde6bP23440 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC18.38■□□□□ 0.53
Pde6bP23440 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Pde6bP23440 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Pde6bP23440 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Pde6bP23440 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Pde6bP23440 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Pde6bP23440 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Pde6bP23440 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Pde6bP23440 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Pde6bP23440 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Pde6bP23440 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Pde6bP23440 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Pde6bP23440 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Pde6bP23440 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Pde6bP23440 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Pde6bP23440 AC154855.1-201ENSMUST00000227353 1458 ntBASIC18.37■□□□□ 0.53
Pde6bP23440 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Pde6bP23440 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC18.37■□□□□ 0.53
Pde6bP23440 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.37■□□□□ 0.53
Pde6bP23440 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Pde6bP23440 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Pde6bP23440 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Pde6bP23440 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Pde6bP23440 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Pde6bP23440 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC18.36■□□□□ 0.53
Pde6bP23440 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Pde6bP23440 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Pde6bP23440 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
Pde6bP23440 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC18.36■□□□□ 0.53
Pde6bP23440 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Pde6bP23440 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Pde6bP23440 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Pde6bP23440 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Pde6bP23440 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Pde6bP23440 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Pde6bP23440 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Pde6bP23440 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Pde6bP23440 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Pde6bP23440 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Pde6bP23440 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms