Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 AC122769.4-201ENSMUST00000228166 901 ntBASIC13.67□□□□□ -0.22
Cdx1P18111 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Cdx1P18111 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Cdx1P18111 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Cdx1P18111 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC13.67□□□□□ -0.22
Cdx1P18111 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC13.67□□□□□ -0.22
Cdx1P18111 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC13.67□□□□□ -0.22
Cdx1P18111 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Cdx1P18111 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC13.66□□□□□ -0.22
Cdx1P18111 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
Cdx1P18111 AC135637.1-201ENSMUST00000227750 365 ntBASIC13.66□□□□□ -0.22
Cdx1P18111 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC13.66□□□□□ -0.22
Cdx1P18111 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Cdx1P18111 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx1P18111 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC13.65□□□□□ -0.22
Cdx1P18111 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC13.65□□□□□ -0.22
Cdx1P18111 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Cdx1P18111 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC13.65□□□□□ -0.22
Cdx1P18111 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Gm16011-201ENSMUST00000121567 2662 ntBASIC13.65□□□□□ -0.22
Cdx1P18111 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx1P18111 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.23
Cdx1P18111 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Cdx1P18111 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC13.64□□□□□ -0.23
Cdx1P18111 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Cdx1P18111 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Gm27032-201ENSMUST00000183124 1116 ntBASIC13.64□□□□□ -0.23
Cdx1P18111 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC13.64□□□□□ -0.23
Cdx1P18111 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 AC153526.5-201ENSMUST00000218661 2147 ntBASIC13.64□□□□□ -0.23
Cdx1P18111 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Cdx1P18111 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdx1P18111 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Cdx1P18111 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC13.63□□□□□ -0.23
Cdx1P18111 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdx1P18111 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Cdx1P18111 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdx1P18111 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC13.63□□□□□ -0.23
Cdx1P18111 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdx1P18111 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms