Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vti1aO89116 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vti1aO89116 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Vti1aO89116 Il3ra-202ENSMUST00000223589 738 ntBASIC18.24■□□□□ 0.51
Vti1aO89116 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vti1aO89116 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vti1aO89116 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vti1aO89116 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vti1aO89116 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vti1aO89116 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vti1aO89116 Gm43272-201ENSMUST00000200599 1584 ntBASIC18.24■□□□□ 0.51
Vti1aO89116 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
Vti1aO89116 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vti1aO89116 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Vti1aO89116 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC18.23■□□□□ 0.51
Vti1aO89116 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Vti1aO89116 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Vti1aO89116 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC18.23■□□□□ 0.51
Vti1aO89116 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
Vti1aO89116 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Vti1aO89116 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
Vti1aO89116 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vti1aO89116 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Vti1aO89116 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vti1aO89116 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vti1aO89116 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vti1aO89116 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vti1aO89116 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Vti1aO89116 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vti1aO89116 Gm11355-201ENSMUST00000121120 306 ntBASIC18.22■□□□□ 0.51
Vti1aO89116 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Vti1aO89116 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vti1aO89116 Gm29518-201ENSMUST00000190858 372 ntBASIC18.22■□□□□ 0.51
Vti1aO89116 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vti1aO89116 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
Vti1aO89116 Gm19439-201ENSMUST00000198195 2273 ntBASIC18.22■□□□□ 0.51
Vti1aO89116 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Vti1aO89116 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vti1aO89116 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Vti1aO89116 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vti1aO89116 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Vti1aO89116 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Vti1aO89116 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vti1aO89116 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vti1aO89116 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vti1aO89116 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vti1aO89116 Gm14464-201ENSMUST00000119658 1254 ntBASIC18.21■□□□□ 0.51
Vti1aO89116 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC18.21■□□□□ 0.51
Vti1aO89116 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vti1aO89116 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vti1aO89116 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vti1aO89116 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vti1aO89116 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Vti1aO89116 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC18.21■□□□□ 0.51
Vti1aO89116 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Vti1aO89116 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.5
Vti1aO89116 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vti1aO89116 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vti1aO89116 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Vti1aO89116 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vti1aO89116 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
Vti1aO89116 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vti1aO89116 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.2■□□□□ 0.5
Vti1aO89116 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.2■□□□□ 0.5
Vti1aO89116 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Vti1aO89116 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Vti1aO89116 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vti1aO89116 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Vti1aO89116 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Vti1aO89116 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vti1aO89116 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vti1aO89116 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vti1aO89116 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vti1aO89116 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vti1aO89116 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vti1aO89116 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vti1aO89116 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vti1aO89116 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
Vti1aO89116 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vti1aO89116 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Vti1aO89116 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC18.19■□□□□ 0.5
Vti1aO89116 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Vti1aO89116 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Vti1aO89116 Gm17808-201ENSMUST00000200859 894 ntBASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms