Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cops4O88544 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cops4O88544 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cops4O88544 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC15.65■□□□□ 0.1
Cops4O88544 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cops4O88544 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cops4O88544 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cops4O88544 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cops4O88544 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Cops4O88544 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC15.64■□□□□ 0.09
Cops4O88544 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Cops4O88544 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Cops4O88544 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC15.64■□□□□ 0.09
Cops4O88544 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
Cops4O88544 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cops4O88544 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cops4O88544 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Cops4O88544 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC15.63■□□□□ 0.09
Cops4O88544 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cops4O88544 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cops4O88544 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cops4O88544 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
Cops4O88544 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Cops4O88544 Mir5133-201ENSMUST00000174955 77 ntBASIC15.63■□□□□ 0.09
Cops4O88544 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cops4O88544 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC15.63■□□□□ 0.09
Cops4O88544 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC15.63■□□□□ 0.09
Cops4O88544 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Cops4O88544 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Cops4O88544 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cops4O88544 AC154231.1-201ENSMUST00000220564 2175 ntBASIC15.63■□□□□ 0.09
Cops4O88544 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cops4O88544 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Cops4O88544 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cops4O88544 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cops4O88544 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Gm2399-201ENSMUST00000104944 225 ntBASIC15.62■□□□□ 0.09
Cops4O88544 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC15.62■□□□□ 0.09
Cops4O88544 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
Cops4O88544 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
Cops4O88544 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
Cops4O88544 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cops4O88544 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Cops4O88544 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
Cops4O88544 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cops4O88544 Zkscan3-208ENSMUST00000224820 5398 ntBASIC15.61■□□□□ 0.09
Cops4O88544 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Cops4O88544 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC15.61■□□□□ 0.09
Cops4O88544 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cops4O88544 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
Cops4O88544 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cops4O88544 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC15.61■□□□□ 0.09
Cops4O88544 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC15.61■□□□□ 0.09
Cops4O88544 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
Cops4O88544 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cops4O88544 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cops4O88544 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Cops4O88544 Tfap2a-209ENSMUST00000225180 1828 ntBASIC15.61■□□□□ 0.09
Cops4O88544 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Cops4O88544 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Cops4O88544 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cops4O88544 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Cops4O88544 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cops4O88544 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms