Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Gm13534-201ENSMUST00000121169 513 ntBASIC14.09□□□□□ -0.15
Hmgb3O54879 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Hmgb3O54879 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.09□□□□□ -0.15
Hmgb3O54879 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hmgb3O54879 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
Hmgb3O54879 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Hmgb3O54879 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
Hmgb3O54879 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Hmgb3O54879 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC14.08□□□□□ -0.16
Hmgb3O54879 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb3O54879 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb3O54879 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb3O54879 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Hmgb3O54879 Gm13146-201ENSMUST00000118508 780 ntBASIC14.08□□□□□ -0.16
Hmgb3O54879 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC14.08□□□□□ -0.16
Hmgb3O54879 Cdc34b-202ENSMUST00000188741 1252 ntBASIC14.08□□□□□ -0.16
Hmgb3O54879 Gm43060-201ENSMUST00000200621 289 ntBASIC14.08□□□□□ -0.16
Hmgb3O54879 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb3O54879 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Hmgb3O54879 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb3O54879 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
Hmgb3O54879 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb3O54879 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC14.08□□□□□ -0.16
Hmgb3O54879 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
Hmgb3O54879 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb3O54879 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Hmgb3O54879 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb3O54879 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Hmgb3O54879 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb3O54879 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb3O54879 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb3O54879 AC131586.2-201ENSMUST00000228370 1512 ntBASIC14.07□□□□□ -0.16
Hmgb3O54879 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Hmgb3O54879 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC14.07□□□□□ -0.16
Hmgb3O54879 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Hmgb3O54879 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb3O54879 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb3O54879 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC14.07□□□□□ -0.16
Hmgb3O54879 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb3O54879 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC14.07□□□□□ -0.16
Hmgb3O54879 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb3O54879 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC14.07□□□□□ -0.16
Hmgb3O54879 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb3O54879 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Hmgb3O54879 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb3O54879 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb3O54879 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC14.06□□□□□ -0.16
Hmgb3O54879 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb3O54879 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC14.06□□□□□ -0.16
Hmgb3O54879 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb3O54879 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb3O54879 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb3O54879 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC14.06□□□□□ -0.16
Hmgb3O54879 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Hmgb3O54879 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb3O54879 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC14.06□□□□□ -0.16
Hmgb3O54879 Gm27454-201ENSMUST00000185090 204 ntBASIC14.06□□□□□ -0.16
Hmgb3O54879 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC14.06□□□□□ -0.16
Hmgb3O54879 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb3O54879 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb3O54879 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb3O54879 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Hmgb3O54879 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb3O54879 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb3O54879 Gm16499-203ENSMUST00000204633 2177 ntBASIC14.06□□□□□ -0.16
Hmgb3O54879 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb3O54879 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb3O54879 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb3O54879 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb3O54879 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Hmgb3O54879 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC14.05□□□□□ -0.16
Hmgb3O54879 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 73 ms