Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ube4aE9Q735 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Gm16499-203ENSMUST00000204633 2177 ntBASIC20.29■□□□□ 0.84
Ube4aE9Q735 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ube4aE9Q735 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ube4aE9Q735 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ube4aE9Q735 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ube4aE9Q735 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ube4aE9Q735 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ube4aE9Q735 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ube4aE9Q735 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ube4aE9Q735 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ube4aE9Q735 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC20.28■□□□□ 0.84
Ube4aE9Q735 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ube4aE9Q735 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ube4aE9Q735 Gfra2-202ENSMUST00000227633 1480 ntBASIC20.28■□□□□ 0.84
Ube4aE9Q735 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ube4aE9Q735 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Ube4aE9Q735 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC20.27■□□□□ 0.84
Ube4aE9Q735 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ube4aE9Q735 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ube4aE9Q735 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ube4aE9Q735 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ube4aE9Q735 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ube4aE9Q735 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ube4aE9Q735 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ube4aE9Q735 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ube4aE9Q735 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC20.27■□□□□ 0.84
Ube4aE9Q735 Gm13312-201ENSMUST00000119631 718 ntBASIC20.27■□□□□ 0.84
Ube4aE9Q735 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC20.27■□□□□ 0.84
Ube4aE9Q735 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC20.27■□□□□ 0.84
Ube4aE9Q735 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Ube4aE9Q735 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.26■□□□□ 0.83
Ube4aE9Q735 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ube4aE9Q735 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC20.26■□□□□ 0.83
Ube4aE9Q735 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ube4aE9Q735 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ube4aE9Q735 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ube4aE9Q735 AC153794.1-201ENSMUST00000169148 126 ntBASIC20.26■□□□□ 0.83
Ube4aE9Q735 Gm43347-201ENSMUST00000200226 580 ntBASIC20.26■□□□□ 0.83
Ube4aE9Q735 AC164629.2-201ENSMUST00000217916 270 ntBASIC20.26■□□□□ 0.83
Ube4aE9Q735 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ube4aE9Q735 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
Ube4aE9Q735 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ube4aE9Q735 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ube4aE9Q735 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ube4aE9Q735 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Ube4aE9Q735 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Ube4aE9Q735 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ube4aE9Q735 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ube4aE9Q735 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ube4aE9Q735 Gm45203-201ENSMUST00000206384 1831 ntBASIC20.25■□□□□ 0.83
Ube4aE9Q735 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC20.25■□□□□ 0.83
Ube4aE9Q735 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ube4aE9Q735 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
Ube4aE9Q735 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ube4aE9Q735 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ube4aE9Q735 Gm28659-201ENSMUST00000188013 759 ntBASIC20.25■□□□□ 0.83
Ube4aE9Q735 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC20.25■□□□□ 0.83
Ube4aE9Q735 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Ube4aE9Q735 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Ube4aE9Q735 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ube4aE9Q735 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ube4aE9Q735 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ube4aE9Q735 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC20.25■□□□□ 0.83
Ube4aE9Q735 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ube4aE9Q735 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ube4aE9Q735 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Ube4aE9Q735 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ube4aE9Q735 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ube4aE9Q735 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ube4aE9Q735 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ube4aE9Q735 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC20.24■□□□□ 0.83
Ube4aE9Q735 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ube4aE9Q735 Mzt1-203ENSMUST00000227948 952 ntBASIC20.24■□□□□ 0.83
Ube4aE9Q735 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ube4aE9Q735 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ube4aE9Q735 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ube4aE9Q735 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ube4aE9Q735 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Ube4aE9Q735 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ube4aE9Q735 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ube4aE9Q735 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Ube4aE9Q735 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC20.23■□□□□ 0.83
Ube4aE9Q735 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms