Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 TMA16P2-201ENST00000413187 601 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 OR2AT2P-201ENST00000413438 905 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AK4P4-201ENST00000419465 646 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AC016027.5-201ENST00000427227 210 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AL445928.1-201ENST00000435545 222 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AC013410.1-201ENST00000436223 1232 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AC104164.1-201ENST00000460282 590 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 NENFP3-201ENST00000503735 313 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AC109481.1-201ENST00000509173 282 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 GAPDHP71-201ENST00000511530 1003 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AC090651.1-201ENST00000567865 634 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 MIR132-201ENST00000591554 101 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AC027334.1-201ENST00000603257 310 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AL589674.2-201ENST00000604304 337 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AC018690.1-201ENST00000608144 626 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 CR788268.1-201ENST00000603931 1809 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 AL138820.1-201ENST00000617901 5305 ntBASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AC110373.1-201ENST00000505994 3505 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AMELX-201ENST00000348912 737 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AL360271.1-201ENST00000395679 510 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AL391361.1-201ENST00000405580 489 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 OR3A2-201ENST00000408891 1076 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AC117434.1-201ENST00000419971 836 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 TRGV7-201ENST00000427089 353 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 NPM1P48-201ENST00000436002 853 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 RPS7P3-201ENST00000443360 580 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 RPL23AP40-201ENST00000487630 390 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AL133372.1-201ENST00000493565 745 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 CCDC11P1-201ENST00000503137 1162 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AP001960.1-201ENST00000506494 658 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 RNU6-551P-201ENST00000516661 103 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 HMGN2P36-201ENST00000529541 409 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AC090286.3-201ENST00000573133 187 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AL691477.1-201ENST00000624398 162 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 AC016583.1-201ENST00000624221 2431 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 SNX18P3-202ENST00000565670 1750 ntBASIC5.75□□□□□ -1.49
CCDC3Q9BQI4 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 HMGB1P20-201ENST00000402555 677 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 RPL7P58-201ENST00000402913 758 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 RN7SKP166-201ENST00000410812 305 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 BX510359.3-201ENST00000422168 306 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 AC127526.2-201ENST00000426436 775 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 AC002504.1-201ENST00000438281 691 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 EIF3LP3-201ENST00000495197 822 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms