Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 S100A7-202ENST00000368723 479 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 SAMD13-203ENST00000370670 565 ntAPPRIS P1 TSL 4 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AL445991.1-201ENST00000450381 475 ntBASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 CAMTA1-205ENST00000467404 546 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AC023245.1-201ENST00000468501 517 ntBASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 RN7SL790P-201ENST00000474043 298 ntBASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 HMGB3P14-201ENST00000494195 599 ntBASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AC111000.5-201ENST00000506559 1178 ntBASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AC105384.2-201ENST00000508433 640 ntBASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 RNA5SP75-201ENST00000516841 111 ntBASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 EIF4EP5-201ENST00000528228 640 ntBASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 GARSP1-201ENST00000570895 719 ntBASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AC145423.1-201ENST00000605712 336 ntBASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 NQO2-209ENST00000606474 470 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AL035661.1-201ENST00000620459 1144 ntBASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AL122023.1-201ENST00000622847 530 ntBASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 AC007938.2-201ENST00000604666 2634 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AC116158.1-201ENST00000560231 2129 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AC025574.1-201ENST00000554784 1653 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AL080312.1-201ENST00000256654 824 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 MIR27A-201ENST00000385073 78 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 PRELID1P1-201ENST00000403549 660 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 SNRPEP6-201ENST00000407465 277 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 RN7SKP97-201ENST00000410966 333 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 TRGV5P-201ENST00000419915 354 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AC130360.1-201ENST00000425489 1117 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AL161722.1-201ENST00000446972 1032 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 MEMO1P4-201ENST00000453590 386 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 RN7SL267P-201ENST00000485107 261 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 IQCH-203ENST00000512104 1000 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 IGLV3-24-201ENST00000517477 197 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AC130365.2-201ENST00000525882 1201 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AC027796.1-201ENST00000575593 512 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AC006120.1-201ENST00000579375 546 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AC073869.7-201ENST00000640874 297 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 AC007842.1-201ENST00000597336 2039 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.63□□□□□ -1.51
CCDC28BQ9BUN5 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms