Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim54Q9ERP3 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim54Q9ERP3 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim54Q9ERP3 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Trim54Q9ERP3 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim54Q9ERP3 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim54Q9ERP3 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim54Q9ERP3 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim54Q9ERP3 AC122351.1-201ENSMUST00000220467 126 ntBASIC18.34■□□□□ 0.53
Trim54Q9ERP3 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
Trim54Q9ERP3 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.34■□□□□ 0.53
Trim54Q9ERP3 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim54Q9ERP3 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trim54Q9ERP3 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Trim54Q9ERP3 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Trim54Q9ERP3 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim54Q9ERP3 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Trim54Q9ERP3 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
Trim54Q9ERP3 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Trim54Q9ERP3 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim54Q9ERP3 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trim54Q9ERP3 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim54Q9ERP3 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim54Q9ERP3 Gm27000-201ENSMUST00000182943 842 ntBASIC18.33■□□□□ 0.52
Trim54Q9ERP3 Gm27742-201ENSMUST00000184667 60 ntBASIC18.33■□□□□ 0.52
Trim54Q9ERP3 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim54Q9ERP3 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim54Q9ERP3 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Trim54Q9ERP3 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Trim54Q9ERP3 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim54Q9ERP3 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Trim54Q9ERP3 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trim54Q9ERP3 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trim54Q9ERP3 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim54Q9ERP3 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Mir3081-201ENSMUST00000175305 84 ntBASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC18.32■□□□□ 0.52
Trim54Q9ERP3 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim54Q9ERP3 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Gm45328-201ENSMUST00000210942 917 ntBASIC18.3■□□□□ 0.52
Trim54Q9ERP3 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Trim54Q9ERP3 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Trim54Q9ERP3 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim54Q9ERP3 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim54Q9ERP3 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim54Q9ERP3 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim54Q9ERP3 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim54Q9ERP3 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC18.29■□□□□ 0.52
Trim54Q9ERP3 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim54Q9ERP3 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Trim54Q9ERP3 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms