Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Brf1Q8CFK2 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Brf1Q8CFK2 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Brf1Q8CFK2 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Brf1Q8CFK2 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC20.47■□□□□ 0.87
Brf1Q8CFK2 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Brf1Q8CFK2 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Brf1Q8CFK2 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
Brf1Q8CFK2 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC20.47■□□□□ 0.87
Brf1Q8CFK2 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Brf1Q8CFK2 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Gm16401-202ENSMUST00000197463 2074 ntBASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Gm2274-201ENSMUST00000184539 609 ntBASIC20.46■□□□□ 0.87
Brf1Q8CFK2 AC159205.6-201ENSMUST00000224935 887 ntBASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Brf1Q8CFK2 Gm8668-201ENSMUST00000120559 1447 ntBASIC20.45■□□□□ 0.86
Brf1Q8CFK2 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Brf1Q8CFK2 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Brf1Q8CFK2 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Brf1Q8CFK2 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Brf1Q8CFK2 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Brf1Q8CFK2 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Brf1Q8CFK2 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC20.45■□□□□ 0.86
Brf1Q8CFK2 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Brf1Q8CFK2 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Brf1Q8CFK2 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Brf1Q8CFK2 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Brf1Q8CFK2 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Brf1Q8CFK2 Gm11841-201ENSMUST00000117060 1963 ntBASIC20.45■□□□□ 0.86
Brf1Q8CFK2 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 AC154855.1-201ENSMUST00000227353 1458 ntBASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Brf1Q8CFK2 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Gm7292-201ENSMUST00000194706 2527 ntBASIC20.43■□□□□ 0.86
Brf1Q8CFK2 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC20.42■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms