Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Tfap2a-209ENSMUST00000225180 1828 ntBASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Gm18671-201ENSMUST00000214826 683 ntBASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ccdc28bQ8CEG5 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Ccdc28bQ8CEG5 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Ccdc28bQ8CEG5 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
Ccdc28bQ8CEG5 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Ccdc28bQ8CEG5 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
Ccdc28bQ8CEG5 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Ccdc28bQ8CEG5 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Gm19721-201ENSMUST00000195284 1764 ntBASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ccdc28bQ8CEG5 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ccdc28bQ8CEG5 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ccdc28bQ8CEG5 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ccdc28bQ8CEG5 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Ccdc28bQ8CEG5 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ccdc28bQ8CEG5 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ccdc28bQ8CEG5 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Ccdc28bQ8CEG5 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Ccdc28bQ8CEG5 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ccdc28bQ8CEG5 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ccdc28bQ8CEG5 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Ccdc28bQ8CEG5 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ccdc28bQ8CEG5 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ccdc28bQ8CEG5 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Gm7290-201ENSMUST00000104990 617 ntBASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Gm12918-201ENSMUST00000120234 636 ntBASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Gm15710-201ENSMUST00000121821 636 ntBASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Gm29241-201ENSMUST00000189260 1096 ntBASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Gm5075-201ENSMUST00000196916 622 ntBASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Ccdc28bQ8CEG5 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms