Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Gm18421-201ENSMUST00000204122 625 ntBASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC15.26■□□□□ 0.03
Col6a6Q8C6K9 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a6Q8C6K9 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a6Q8C6K9 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC15.25■□□□□ 0.03
Col6a6Q8C6K9 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC15.25■□□□□ 0.03
Col6a6Q8C6K9 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a6Q8C6K9 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC15.25■□□□□ 0.03
Col6a6Q8C6K9 Gm5364-201ENSMUST00000216789 889 ntBASIC15.25■□□□□ 0.03
Col6a6Q8C6K9 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a6Q8C6K9 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a6Q8C6K9 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a6Q8C6K9 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a6Q8C6K9 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC15.25■□□□□ 0.03
Col6a6Q8C6K9 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a6Q8C6K9 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a6Q8C6K9 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 AC108846.1-201ENSMUST00000214531 513 ntBASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a6Q8C6K9 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Gm27000-201ENSMUST00000182943 842 ntBASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Gm11594-201ENSMUST00000122313 162 ntBASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Mir8112-201ENSMUST00000184382 131 ntBASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a6Q8C6K9 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a6Q8C6K9 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a6Q8C6K9 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC15.21■□□□□ 0.03
Col6a6Q8C6K9 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a6Q8C6K9 Wnt10b-204ENSMUST00000226655 1807 ntBASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms