Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC18.69■□□□□ 0.58
CtcfQ61164 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CtcfQ61164 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CtcfQ61164 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CtcfQ61164 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CtcfQ61164 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CtcfQ61164 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CtcfQ61164 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CtcfQ61164 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CtcfQ61164 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CtcfQ61164 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC18.68■□□□□ 0.58
CtcfQ61164 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC18.68■□□□□ 0.58
CtcfQ61164 Gm29257-201ENSMUST00000186115 639 ntBASIC18.68■□□□□ 0.58
CtcfQ61164 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC18.68■□□□□ 0.58
CtcfQ61164 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CtcfQ61164 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.68■□□□□ 0.58
CtcfQ61164 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CtcfQ61164 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC18.68■□□□□ 0.58
CtcfQ61164 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CtcfQ61164 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CtcfQ61164 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CtcfQ61164 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CtcfQ61164 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CtcfQ61164 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CtcfQ61164 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
CtcfQ61164 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CtcfQ61164 Gm10418-201ENSMUST00000100943 576 ntBASIC18.67■□□□□ 0.58
CtcfQ61164 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
CtcfQ61164 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CtcfQ61164 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC18.67■□□□□ 0.58
CtcfQ61164 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CtcfQ61164 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CtcfQ61164 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CtcfQ61164 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
CtcfQ61164 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CtcfQ61164 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CtcfQ61164 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CtcfQ61164 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CtcfQ61164 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CtcfQ61164 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CtcfQ61164 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CtcfQ61164 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CtcfQ61164 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CtcfQ61164 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CtcfQ61164 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.66■□□□□ 0.58
CtcfQ61164 Gm20049-201ENSMUST00000219950 730 ntBASIC18.66■□□□□ 0.58
CtcfQ61164 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CtcfQ61164 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CtcfQ61164 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CtcfQ61164 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.66■□□□□ 0.58
CtcfQ61164 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CtcfQ61164 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CtcfQ61164 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CtcfQ61164 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CtcfQ61164 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CtcfQ61164 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CtcfQ61164 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.65■□□□□ 0.58
CtcfQ61164 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CtcfQ61164 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CtcfQ61164 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CtcfQ61164 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CtcfQ61164 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC18.65■□□□□ 0.58
CtcfQ61164 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.65■□□□□ 0.58
CtcfQ61164 Mir6349-201ENSMUST00000184059 97 ntBASIC18.65■□□□□ 0.58
CtcfQ61164 Gm18025-201ENSMUST00000221733 862 ntBASIC18.65■□□□□ 0.58
CtcfQ61164 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CtcfQ61164 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC18.65■□□□□ 0.58
CtcfQ61164 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CtcfQ61164 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC18.65■□□□□ 0.58
CtcfQ61164 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CtcfQ61164 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CtcfQ61164 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CtcfQ61164 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
CtcfQ61164 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CtcfQ61164 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CtcfQ61164 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CtcfQ61164 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC18.65■□□□□ 0.58
CtcfQ61164 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CtcfQ61164 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CtcfQ61164 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CtcfQ61164 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.64■□□□□ 0.57
CtcfQ61164 Gm12527-201ENSMUST00000117967 564 ntBASIC18.64■□□□□ 0.57
CtcfQ61164 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CtcfQ61164 AC166341.7-201ENSMUST00000221698 126 ntBASIC18.64■□□□□ 0.57
CtcfQ61164 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CtcfQ61164 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CtcfQ61164 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CtcfQ61164 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CtcfQ61164 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CtcfQ61164 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CtcfQ61164 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms