Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav6d-4Q5R1I0 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav6d-4Q5R1I0 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trav6d-4Q5R1I0 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC14.26□□□□□ -0.13
Trav6d-4Q5R1I0 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trav6d-4Q5R1I0 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav6d-4Q5R1I0 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav6d-4Q5R1I0 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav6d-4Q5R1I0 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Actl10-202ENSMUST00000226583 1501 ntBASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Gm37519-201ENSMUST00000191687 2210 ntBASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Gm26039-201ENSMUST00000158152 144 ntBASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav6d-4Q5R1I0 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 AC130671.1-201ENSMUST00000227384 1237 ntBASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Gm44832-201ENSMUST00000208849 2303 ntBASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav6d-4Q5R1I0 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Gm37811-201ENSMUST00000192416 2601 ntBASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav6d-4Q5R1I0 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC14.22□□□□□ -0.13
Trav6d-4Q5R1I0 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC14.22□□□□□ -0.13
Trav6d-4Q5R1I0 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6d-4Q5R1I0 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6d-4Q5R1I0 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6d-4Q5R1I0 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6d-4Q5R1I0 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC14.22□□□□□ -0.13
Trav6d-4Q5R1I0 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6d-4Q5R1I0 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6d-4Q5R1I0 Gm25016-201ENSMUST00000158399 131 ntBASIC14.22□□□□□ -0.13
Trav6d-4Q5R1I0 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6d-4Q5R1I0 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC14.22□□□□□ -0.13
Trav6d-4Q5R1I0 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav6d-4Q5R1I0 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms