Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col27a1Q5QNQ9 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC16.38■□□□□ 0.21
Col27a1Q5QNQ9 Gm8349-201ENSMUST00000182720 1003 ntBASIC16.38■□□□□ 0.21
Col27a1Q5QNQ9 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col27a1Q5QNQ9 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC16.38■□□□□ 0.21
Col27a1Q5QNQ9 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col27a1Q5QNQ9 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
Col27a1Q5QNQ9 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col27a1Q5QNQ9 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Col27a1Q5QNQ9 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col27a1Q5QNQ9 AC127349.1-201ENSMUST00000224590 266 ntBASIC16.38■□□□□ 0.21
Col27a1Q5QNQ9 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col27a1Q5QNQ9 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col27a1Q5QNQ9 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 Gm45141-201ENSMUST00000206502 1888 ntBASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 Mir8117-201ENSMUST00000184773 107 ntBASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col27a1Q5QNQ9 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col27a1Q5QNQ9 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col27a1Q5QNQ9 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col27a1Q5QNQ9 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col27a1Q5QNQ9 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col27a1Q5QNQ9 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col27a1Q5QNQ9 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col27a1Q5QNQ9 Gm14701-201ENSMUST00000117156 348 ntBASIC16.36■□□□□ 0.21
Col27a1Q5QNQ9 AC124549.3-201ENSMUST00000225541 367 ntBASIC16.36■□□□□ 0.21
Col27a1Q5QNQ9 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col27a1Q5QNQ9 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col27a1Q5QNQ9 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col27a1Q5QNQ9 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col27a1Q5QNQ9 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC16.35■□□□□ 0.21
Col27a1Q5QNQ9 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC16.35■□□□□ 0.21
Col27a1Q5QNQ9 AC114585.2-202ENSMUST00000228094 426 ntBASIC16.35■□□□□ 0.21
Col27a1Q5QNQ9 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col27a1Q5QNQ9 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col27a1Q5QNQ9 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col27a1Q5QNQ9 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Col27a1Q5QNQ9 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col27a1Q5QNQ9 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col27a1Q5QNQ9 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col27a1Q5QNQ9 Gm4913-201ENSMUST00000117075 1290 ntBASIC16.35■□□□□ 0.21
Col27a1Q5QNQ9 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col27a1Q5QNQ9 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col27a1Q5QNQ9 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Mir6956-201ENSMUST00000183598 62 ntBASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Gm37500-201ENSMUST00000192059 1443 ntBASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Col27a1Q5QNQ9 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.33■□□□□ 0.21
Col27a1Q5QNQ9 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
Col27a1Q5QNQ9 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col27a1Q5QNQ9 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col27a1Q5QNQ9 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col27a1Q5QNQ9 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC16.33■□□□□ 0.21
Col27a1Q5QNQ9 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Col27a1Q5QNQ9 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col27a1Q5QNQ9 Gm43231-201ENSMUST00000202960 2258 ntBASIC16.33■□□□□ 0.2
Col27a1Q5QNQ9 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
Col27a1Q5QNQ9 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Col27a1Q5QNQ9 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col27a1Q5QNQ9 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
Col27a1Q5QNQ9 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col27a1Q5QNQ9 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col27a1Q5QNQ9 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC16.33■□□□□ 0.2
Col27a1Q5QNQ9 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col27a1Q5QNQ9 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col27a1Q5QNQ9 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col27a1Q5QNQ9 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Gm3928-201ENSMUST00000121141 1307 ntBASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Gm8784-201ENSMUST00000222096 1435 ntBASIC16.32■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms