Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Krtap5-1-202ENSMUST00000188274 742 ntBASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Upf3bQ3ULL6 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Upf3bQ3ULL6 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
Upf3bQ3ULL6 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Upf3bQ3ULL6 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Upf3bQ3ULL6 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Upf3bQ3ULL6 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Upf3bQ3ULL6 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Upf3bQ3ULL6 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3bQ3ULL6 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Gm18958-201ENSMUST00000174258 762 ntBASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC18.13■□□□□ 0.49
Upf3bQ3ULL6 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Gm7889-201ENSMUST00000185591 958 ntBASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3bQ3ULL6 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Upf3bQ3ULL6 Gm6433-201ENSMUST00000118634 875 ntBASIC18.11■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms