Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Gm12260-201ENSMUST00000122447 411 ntBASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Gm44430-201ENSMUST00000203376 995 ntBASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Zfp264-201ENSMUST00000208656 1563 ntBASIC21.53■■□□□ 1.04
Ddb1Q3U1J4 Gm25990-201ENSMUST00000102440 86 ntBASIC21.52■■□□□ 1.04
Ddb1Q3U1J4 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Ddb1Q3U1J4 Gm7230-201ENSMUST00000173026 815 ntBASIC21.52■■□□□ 1.04
Ddb1Q3U1J4 Gm7063-201ENSMUST00000186840 981 ntBASIC21.52■■□□□ 1.04
Ddb1Q3U1J4 CT009713.7-201ENSMUST00000224689 571 ntBASIC21.52■■□□□ 1.04
Ddb1Q3U1J4 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
Ddb1Q3U1J4 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddb1Q3U1J4 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddb1Q3U1J4 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddb1Q3U1J4 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddb1Q3U1J4 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddb1Q3U1J4 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddb1Q3U1J4 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddb1Q3U1J4 Gm6627-201ENSMUST00000218299 2386 ntBASIC21.52■■□□□ 1.04
Ddb1Q3U1J4 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Ddb1Q3U1J4 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddb1Q3U1J4 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddb1Q3U1J4 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddb1Q3U1J4 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddb1Q3U1J4 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Ddb1Q3U1J4 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC21.51■■□□□ 1.03
Ddb1Q3U1J4 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC21.51■■□□□ 1.03
Ddb1Q3U1J4 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddb1Q3U1J4 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddb1Q3U1J4 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddb1Q3U1J4 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC21.51■■□□□ 1.03
Ddb1Q3U1J4 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddb1Q3U1J4 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddb1Q3U1J4 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ddb1Q3U1J4 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ddb1Q3U1J4 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ddb1Q3U1J4 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ddb1Q3U1J4 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Ddb1Q3U1J4 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
Ddb1Q3U1J4 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Ddb1Q3U1J4 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC21.5■■□□□ 1.03
Ddb1Q3U1J4 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC21.5■■□□□ 1.03
Ddb1Q3U1J4 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC21.5■■□□□ 1.03
Ddb1Q3U1J4 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ddb1Q3U1J4 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Gm14494-201ENSMUST00000118786 435 ntBASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Gm13418-201ENSMUST00000119097 944 ntBASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ddb1Q3U1J4 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Gm15173-201ENSMUST00000122049 433 ntBASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms