Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC18.68■□□□□ 0.58
Col6a1Q04857 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a1Q04857 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a1Q04857 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Col6a1Q04857 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC18.68■□□□□ 0.58
Col6a1Q04857 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a1Q04857 AC121961.1-201ENSMUST00000218594 1779 ntBASIC18.68■□□□□ 0.58
Col6a1Q04857 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a1Q04857 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Col6a1Q04857 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC18.67■□□□□ 0.58
Col6a1Q04857 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Col6a1Q04857 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Col6a1Q04857 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC18.67■□□□□ 0.58
Col6a1Q04857 AC153889.1-201ENSMUST00000219257 330 ntBASIC18.67■□□□□ 0.58
Col6a1Q04857 AC122351.1-201ENSMUST00000220467 126 ntBASIC18.67■□□□□ 0.58
Col6a1Q04857 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC18.67■□□□□ 0.58
Col6a1Q04857 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Gm19439-201ENSMUST00000198195 2273 ntBASIC18.67■□□□□ 0.58
Col6a1Q04857 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Gm38308-201ENSMUST00000194934 1809 ntBASIC18.67■□□□□ 0.58
Col6a1Q04857 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a1Q04857 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a1Q04857 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
Col6a1Q04857 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a1Q04857 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a1Q04857 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a1Q04857 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a1Q04857 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a1Q04857 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC18.66■□□□□ 0.58
Col6a1Q04857 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a1Q04857 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a1Q04857 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC18.66■□□□□ 0.58
Col6a1Q04857 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a1Q04857 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Col6a1Q04857 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a1Q04857 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a1Q04857 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a1Q04857 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a1Q04857 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a1Q04857 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a1Q04857 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a1Q04857 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a1Q04857 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Col6a1Q04857 Gm9449-201ENSMUST00000207265 1011 ntBASIC18.65■□□□□ 0.58
Col6a1Q04857 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a1Q04857 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC18.65■□□□□ 0.58
Col6a1Q04857 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Col6a1Q04857 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a1Q04857 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a1Q04857 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a1Q04857 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a1Q04857 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a1Q04857 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Col6a1Q04857 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Col6a1Q04857 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col6a1Q04857 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col6a1Q04857 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
Col6a1Q04857 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC18.64■□□□□ 0.57
Col6a1Q04857 Gm10052-201ENSMUST00000168019 960 ntBASIC18.64■□□□□ 0.57
Col6a1Q04857 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC18.64■□□□□ 0.57
Col6a1Q04857 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC18.64■□□□□ 0.57
Col6a1Q04857 Gm29791-202ENSMUST00000207888 369 ntBASIC18.64■□□□□ 0.57
Col6a1Q04857 Gm7729-201ENSMUST00000050143 801 ntBASIC18.64■□□□□ 0.57
Col6a1Q04857 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col6a1Q04857 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col6a1Q04857 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col6a1Q04857 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col6a1Q04857 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col6a1Q04857 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col6a1Q04857 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col6a1Q04857 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a1Q04857 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a1Q04857 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Col6a1Q04857 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a1Q04857 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a1Q04857 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC18.63■□□□□ 0.57
Col6a1Q04857 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a1Q04857 AC159301.1-201ENSMUST00000225130 1182 ntBASIC18.63■□□□□ 0.57
Col6a1Q04857 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a1Q04857 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a1Q04857 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a1Q04857 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Col6a1Q04857 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Col6a1Q04857 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a1Q04857 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a1Q04857 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a1Q04857 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms