Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col8a1Q00780 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col8a1Q00780 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col8a1Q00780 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col8a1Q00780 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col8a1Q00780 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col8a1Q00780 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col8a1Q00780 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col8a1Q00780 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col8a1Q00780 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col8a1Q00780 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC14.43□□□□□ -0.1
Col8a1Q00780 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC14.43□□□□□ -0.1
Col8a1Q00780 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col8a1Q00780 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC14.43□□□□□ -0.1
Col8a1Q00780 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col8a1Q00780 AC153889.1-201ENSMUST00000219257 330 ntBASIC14.43□□□□□ -0.1
Col8a1Q00780 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col8a1Q00780 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col8a1Q00780 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Col8a1Q00780 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC14.42□□□□□ -0.1
Col8a1Q00780 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Col8a1Q00780 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
Col8a1Q00780 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Gm7935-201ENSMUST00000100555 1278 ntBASIC14.42□□□□□ -0.1
Col8a1Q00780 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
Col8a1Q00780 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Gm1401-201ENSMUST00000122048 772 ntBASIC14.42□□□□□ -0.1
Col8a1Q00780 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Gm43332-201ENSMUST00000202511 1044 ntBASIC14.42□□□□□ -0.1
Col8a1Q00780 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC14.42□□□□□ -0.1
Col8a1Q00780 AC122351.1-201ENSMUST00000220467 126 ntBASIC14.42□□□□□ -0.1
Col8a1Q00780 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC14.42□□□□□ -0.1
Col8a1Q00780 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
Col8a1Q00780 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col8a1Q00780 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Col8a1Q00780 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 Gm8000-201ENSMUST00000188378 592 ntBASIC14.41□□□□□ -0.1
Col8a1Q00780 Gm2213-201ENSMUST00000197485 688 ntBASIC14.41□□□□□ -0.1
Col8a1Q00780 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC14.41□□□□□ -0.1
Col8a1Q00780 AC161829.1-201ENSMUST00000220298 281 ntBASIC14.41□□□□□ -0.1
Col8a1Q00780 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Col8a1Q00780 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Col8a1Q00780 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 BC021767-201ENSMUST00000126387 1716 ntBASIC14.41□□□□□ -0.1
Col8a1Q00780 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col8a1Q00780 Gm9194-201ENSMUST00000220749 1447 ntBASIC14.41□□□□□ -0.1
Col8a1Q00780 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col8a1Q00780 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col8a1Q00780 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col8a1Q00780 AC121961.1-201ENSMUST00000218594 1779 ntBASIC14.4□□□□□ -0.1
Col8a1Q00780 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col8a1Q00780 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col8a1Q00780 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col8a1Q00780 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC14.4□□□□□ -0.1
Col8a1Q00780 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC14.4□□□□□ -0.1
Col8a1Q00780 Gm38342-201ENSMUST00000195710 2980 ntBASIC14.4□□□□□ -0.1
Col8a1Q00780 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Col8a1Q00780 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC14.4□□□□□ -0.1
Col8a1Q00780 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col8a1Q00780 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col8a1Q00780 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col8a1Q00780 Gm38308-201ENSMUST00000194934 1809 ntBASIC14.4□□□□□ -0.1
Col8a1Q00780 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col8a1Q00780 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col8a1Q00780 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col8a1Q00780 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Col8a1Q00780 Rarb-207ENSMUST00000225921 2756 ntBASIC14.39□□□□□ -0.11
Col8a1Q00780 Gm35558-201ENSMUST00000222675 2219 ntBASIC14.39□□□□□ -0.11
Col8a1Q00780 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col8a1Q00780 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col8a1Q00780 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Col8a1Q00780 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Col8a1Q00780 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC14.39□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms