Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Sox3P53784 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Sox3P53784 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Sox3P53784 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC16.21■□□□□ 0.19
Sox3P53784 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Sox3P53784 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
Sox3P53784 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Sox3P53784 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC16.21■□□□□ 0.19
Sox3P53784 Gm38027-201ENSMUST00000192315 235 ntBASIC16.21■□□□□ 0.19
Sox3P53784 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Sox3P53784 Mzt1-203ENSMUST00000227948 952 ntBASIC16.21■□□□□ 0.19
Sox3P53784 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Sox3P53784 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Sox3P53784 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Sox3P53784 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Sox3P53784 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC16.21■□□□□ 0.19
Sox3P53784 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Sox3P53784 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Sox3P53784 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Sox3P53784 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Sox3P53784 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
Sox3P53784 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sox3P53784 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sox3P53784 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Sox3P53784 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sox3P53784 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC16.2■□□□□ 0.18
Sox3P53784 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sox3P53784 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
Sox3P53784 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Sox3P53784 Gm29518-201ENSMUST00000190858 372 ntBASIC16.2■□□□□ 0.18
Sox3P53784 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC16.2■□□□□ 0.18
Sox3P53784 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sox3P53784 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sox3P53784 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sox3P53784 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Sox3P53784 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Sox3P53784 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sox3P53784 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Sox3P53784 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sox3P53784 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Sox3P53784 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
Sox3P53784 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sox3P53784 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC16.19■□□□□ 0.18
Sox3P53784 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Sox3P53784 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sox3P53784 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Sox3P53784 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Sox3P53784 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Sox3P53784 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Sox3P53784 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Sox3P53784 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
Sox3P53784 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC16.18■□□□□ 0.18
Sox3P53784 Gm45412-201ENSMUST00000210217 2275 ntBASIC16.18■□□□□ 0.18
Sox3P53784 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Sox3P53784 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Sox3P53784 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Sox3P53784 Gm10654-201ENSMUST00000098653 1633 ntBASIC16.18■□□□□ 0.18
Sox3P53784 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Sox3P53784 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Sox3P53784 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Sox3P53784 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Sox3P53784 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Sox3P53784 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Sox3P53784 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Sox3P53784 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
Sox3P53784 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Sox3P53784 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Sox3P53784 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Sox3P53784 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Sox3P53784 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Sox3P53784 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC16.17■□□□□ 0.18
Sox3P53784 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Sox3P53784 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Sox3P53784 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Sox3P53784 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Sox3P53784 Gm16061-201ENSMUST00000122167 857 ntBASIC16.17■□□□□ 0.18
Sox3P53784 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Sox3P53784 Gm9013-201ENSMUST00000132939 882 ntBASIC16.17■□□□□ 0.18
Sox3P53784 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC16.17■□□□□ 0.18
Sox3P53784 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC16.17■□□□□ 0.18
Sox3P53784 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Sox3P53784 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Sox3P53784 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Sox3P53784 Gm37374-201ENSMUST00000194954 1829 ntBASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms