Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx1P48377 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Rfx1P48377 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Rfx1P48377 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Rfx1P48377 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx1P48377 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
Rfx1P48377 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Rfx1P48377 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx1P48377 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx1P48377 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx1P48377 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx1P48377 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx1P48377 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx1P48377 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx1P48377 Gm42918-201ENSMUST00000199249 1580 ntBASIC20.3■□□□□ 0.84
Rfx1P48377 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx1P48377 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx1P48377 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx1P48377 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx1P48377 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Rfx1P48377 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx1P48377 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx1P48377 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx1P48377 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx1P48377 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx1P48377 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx1P48377 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx1P48377 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
Rfx1P48377 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx1P48377 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx1P48377 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx1P48377 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx1P48377 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx1P48377 Gm6576-201ENSMUST00000169678 883 ntBASIC20.29■□□□□ 0.84
Rfx1P48377 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx1P48377 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx1P48377 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx1P48377 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC20.29■□□□□ 0.84
Rfx1P48377 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Rfx1P48377 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx1P48377 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
Rfx1P48377 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx1P48377 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx1P48377 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx1P48377 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Rfx1P48377 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx1P48377 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx1P48377 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx1P48377 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC20.28■□□□□ 0.84
Rfx1P48377 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.28■□□□□ 0.84
Rfx1P48377 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC20.28■□□□□ 0.84
Rfx1P48377 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx1P48377 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx1P48377 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx1P48377 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx1P48377 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx1P48377 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx1P48377 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Rfx1P48377 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx1P48377 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx1P48377 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx1P48377 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx1P48377 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx1P48377 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC20.27■□□□□ 0.84
Rfx1P48377 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx1P48377 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx1P48377 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
Rfx1P48377 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx1P48377 Gm44672-201ENSMUST00000206944 1098 ntBASIC20.27■□□□□ 0.84
Rfx1P48377 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx1P48377 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx1P48377 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Rfx1P48377 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
Rfx1P48377 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Rfx1P48377 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Rfx1P48377 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Rfx1P48377 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Rfx1P48377 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Rfx1P48377 Gm11643-201ENSMUST00000119578 864 ntBASIC20.26■□□□□ 0.83
Rfx1P48377 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.26■□□□□ 0.83
Rfx1P48377 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC20.26■□□□□ 0.83
Rfx1P48377 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC20.26■□□□□ 0.83
Rfx1P48377 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Rfx1P48377 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC20.26■□□□□ 0.83
Rfx1P48377 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Rfx1P48377 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Rfx1P48377 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Rfx1P48377 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Rfx1P48377 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Rfx1P48377 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Rfx1P48377 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx1P48377 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx1P48377 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx1P48377 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC20.25■□□□□ 0.83
Rfx1P48377 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx1P48377 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx1P48377 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx1P48377 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx1P48377 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx1P48377 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms