Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HttP42859 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HttP42859 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HttP42859 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
HttP42859 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC18.15■□□□□ 0.5
HttP42859 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HttP42859 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HttP42859 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC18.15■□□□□ 0.5
HttP42859 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HttP42859 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC18.15■□□□□ 0.5
HttP42859 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
HttP42859 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC18.14■□□□□ 0.5
HttP42859 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
HttP42859 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HttP42859 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
HttP42859 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HttP42859 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HttP42859 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HttP42859 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HttP42859 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HttP42859 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HttP42859 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
HttP42859 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HttP42859 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HttP42859 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HttP42859 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HttP42859 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HttP42859 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HttP42859 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
HttP42859 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HttP42859 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HttP42859 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC18.14■□□□□ 0.49
HttP42859 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HttP42859 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HttP42859 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HttP42859 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HttP42859 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HttP42859 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HttP42859 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HttP42859 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HttP42859 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HttP42859 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC18.13■□□□□ 0.49
HttP42859 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC18.13■□□□□ 0.49
HttP42859 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HttP42859 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HttP42859 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HttP42859 Gm35558-201ENSMUST00000222675 2219 ntBASIC18.12■□□□□ 0.49
HttP42859 Gm7229-201ENSMUST00000214719 1007 ntBASIC18.12■□□□□ 0.49
HttP42859 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HttP42859 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HttP42859 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HttP42859 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HttP42859 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
HttP42859 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC18.12■□□□□ 0.49
HttP42859 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC18.12■□□□□ 0.49
HttP42859 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HttP42859 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
HttP42859 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HttP42859 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HttP42859 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HttP42859 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HttP42859 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC18.12■□□□□ 0.49
HttP42859 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC18.12■□□□□ 0.49
HttP42859 Gm18421-201ENSMUST00000204122 625 ntBASIC18.12■□□□□ 0.49
HttP42859 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HttP42859 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HttP42859 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HttP42859 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC18.11■□□□□ 0.49
HttP42859 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HttP42859 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HttP42859 Mir8117-201ENSMUST00000184773 107 ntBASIC18.11■□□□□ 0.49
HttP42859 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HttP42859 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HttP42859 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HttP42859 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HttP42859 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HttP42859 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HttP42859 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HttP42859 Gm23547-201ENSMUST00000158210 271 ntBASIC18.11■□□□□ 0.49
HttP42859 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HttP42859 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC18.11■□□□□ 0.49
HttP42859 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC18.11■□□□□ 0.49
HttP42859 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
HttP42859 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HttP42859 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HttP42859 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
HttP42859 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HttP42859 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC18.1■□□□□ 0.49
HttP42859 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC18.1■□□□□ 0.49
HttP42859 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC18.1■□□□□ 0.49
HttP42859 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HttP42859 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HttP42859 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HttP42859 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HttP42859 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC18.1■□□□□ 0.49
HttP42859 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HttP42859 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HttP42859 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC18.1■□□□□ 0.49
HttP42859 Gm44872-201ENSMUST00000207864 420 ntBASIC18.1■□□□□ 0.49
HttP42859 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms