Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Col2a1P28481 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col2a1P28481 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col2a1P28481 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col2a1P28481 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col2a1P28481 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col2a1P28481 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col2a1P28481 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
Col2a1P28481 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col2a1P28481 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col2a1P28481 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Col2a1P28481 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC19.22■□□□□ 0.67
Col2a1P28481 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col2a1P28481 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col2a1P28481 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC19.22■□□□□ 0.67
Col2a1P28481 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col2a1P28481 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col2a1P28481 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col2a1P28481 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC19.21■□□□□ 0.67
Col2a1P28481 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col2a1P28481 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col2a1P28481 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col2a1P28481 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col2a1P28481 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col2a1P28481 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col2a1P28481 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC19.21■□□□□ 0.67
Col2a1P28481 AC164629.2-201ENSMUST00000217916 270 ntBASIC19.21■□□□□ 0.67
Col2a1P28481 CT009713.7-201ENSMUST00000224689 571 ntBASIC19.21■□□□□ 0.67
Col2a1P28481 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col2a1P28481 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Col2a1P28481 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col2a1P28481 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col2a1P28481 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col2a1P28481 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.2■□□□□ 0.66
Col2a1P28481 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col2a1P28481 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col2a1P28481 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC19.2■□□□□ 0.66
Col2a1P28481 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col2a1P28481 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col2a1P28481 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
Col2a1P28481 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col2a1P28481 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col2a1P28481 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
Col2a1P28481 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col2a1P28481 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Col2a1P28481 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col2a1P28481 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col2a1P28481 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col2a1P28481 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col2a1P28481 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col2a1P28481 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col2a1P28481 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC19.19■□□□□ 0.66
Col2a1P28481 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC19.19■□□□□ 0.66
Col2a1P28481 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col2a1P28481 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC19.19■□□□□ 0.66
Col2a1P28481 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC19.19■□□□□ 0.66
Col2a1P28481 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC19.19■□□□□ 0.66
Col2a1P28481 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col2a1P28481 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col2a1P28481 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col2a1P28481 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col2a1P28481 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col2a1P28481 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col2a1P28481 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col2a1P28481 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col2a1P28481 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col2a1P28481 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col2a1P28481 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col2a1P28481 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col2a1P28481 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col2a1P28481 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col2a1P28481 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC19.18■□□□□ 0.66
Col2a1P28481 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col2a1P28481 Gm7461-201ENSMUST00000058918 827 ntBASIC19.18■□□□□ 0.66
Col2a1P28481 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col2a1P28481 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col2a1P28481 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
Col2a1P28481 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Col2a1P28481 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col2a1P28481 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC19.18■□□□□ 0.66
Col2a1P28481 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col2a1P28481 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC19.17■□□□□ 0.66
Col2a1P28481 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Col2a1P28481 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col2a1P28481 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col2a1P28481 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col2a1P28481 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col2a1P28481 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC19.17■□□□□ 0.66
Col2a1P28481 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC19.17■□□□□ 0.66
Col2a1P28481 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC19.17■□□□□ 0.66
Col2a1P28481 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col2a1P28481 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Col2a1P28481 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC19.17■□□□□ 0.66
Col2a1P28481 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col2a1P28481 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Col2a1P28481 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col2a1P28481 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col2a1P28481 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col2a1P28481 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col2a1P28481 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms