Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Msh3P13705 Actl10-202ENSMUST00000226583 1501 ntBASIC18.64■□□□□ 0.57
Msh3P13705 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msh3P13705 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC18.63■□□□□ 0.57
Msh3P13705 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
Msh3P13705 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC18.63■□□□□ 0.57
Msh3P13705 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.63■□□□□ 0.57
Msh3P13705 Gm2274-201ENSMUST00000184539 609 ntBASIC18.63■□□□□ 0.57
Msh3P13705 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msh3P13705 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msh3P13705 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msh3P13705 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Msh3P13705 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msh3P13705 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msh3P13705 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.63■□□□□ 0.57
Msh3P13705 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msh3P13705 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msh3P13705 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.63■□□□□ 0.57
Msh3P13705 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msh3P13705 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Msh3P13705 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msh3P13705 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msh3P13705 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msh3P13705 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Msh3P13705 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.62■□□□□ 0.57
Msh3P13705 Gm43799-201ENSMUST00000201845 579 ntBASIC18.62■□□□□ 0.57
Msh3P13705 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msh3P13705 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC18.62■□□□□ 0.57
Msh3P13705 Gm6190-201ENSMUST00000220683 1374 ntBASIC18.62■□□□□ 0.57
Msh3P13705 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Msh3P13705 Gm45203-201ENSMUST00000206384 1831 ntBASIC18.62■□□□□ 0.57
Msh3P13705 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msh3P13705 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msh3P13705 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Msh3P13705 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msh3P13705 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msh3P13705 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msh3P13705 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Msh3P13705 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC18.61■□□□□ 0.57
Msh3P13705 Gm8668-201ENSMUST00000120559 1447 ntBASIC18.61■□□□□ 0.57
Msh3P13705 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.61■□□□□ 0.57
Msh3P13705 Gm13474-201ENSMUST00000122466 815 ntBASIC18.61■□□□□ 0.57
Msh3P13705 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC18.61■□□□□ 0.57
Msh3P13705 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC18.61■□□□□ 0.57
Msh3P13705 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC18.61■□□□□ 0.57
Msh3P13705 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Msh3P13705 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Msh3P13705 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msh3P13705 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Msh3P13705 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msh3P13705 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msh3P13705 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msh3P13705 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Msh3P13705 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msh3P13705 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Msh3P13705 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msh3P13705 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msh3P13705 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC18.6■□□□□ 0.57
Msh3P13705 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msh3P13705 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msh3P13705 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Msh3P13705 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC18.6■□□□□ 0.57
Msh3P13705 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Msh3P13705 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.6■□□□□ 0.57
Msh3P13705 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msh3P13705 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msh3P13705 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.6■□□□□ 0.57
Msh3P13705 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msh3P13705 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Msh3P13705 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Msh3P13705 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msh3P13705 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msh3P13705 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msh3P13705 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Msh3P13705 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Msh3P13705 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Msh3P13705 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Msh3P13705 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Msh3P13705 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Msh3P13705 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Msh3P13705 Gm15565-201ENSMUST00000118890 427 ntBASIC18.59■□□□□ 0.57
Msh3P13705 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC18.59■□□□□ 0.57
Msh3P13705 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC18.59■□□□□ 0.57
Msh3P13705 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Msh3P13705 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC18.59■□□□□ 0.57
Msh3P13705 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Msh3P13705 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Msh3P13705 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Msh3P13705 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Msh3P13705 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Msh3P13705 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Msh3P13705 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Msh3P13705 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Msh3P13705 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Msh3P13705 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Msh3P13705 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Msh3P13705 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Msh3P13705 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Msh3P13705 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
Msh3P13705 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms