Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC19.84■□□□□ 0.77
Col1a1P11087 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC19.84■□□□□ 0.77
Col1a1P11087 Gm43332-201ENSMUST00000202511 1044 ntBASIC19.84■□□□□ 0.77
Col1a1P11087 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC19.84■□□□□ 0.77
Col1a1P11087 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Col1a1P11087 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col1a1P11087 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.83■□□□□ 0.77
Col1a1P11087 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col1a1P11087 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Col1a1P11087 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC19.83■□□□□ 0.76
Col1a1P11087 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC19.83■□□□□ 0.76
Col1a1P11087 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Col1a1P11087 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC19.83■□□□□ 0.76
Col1a1P11087 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
Col1a1P11087 Gm5364-201ENSMUST00000216789 889 ntBASIC19.83■□□□□ 0.76
Col1a1P11087 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col1a1P11087 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC19.83■□□□□ 0.76
Col1a1P11087 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col1a1P11087 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col1a1P11087 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Col1a1P11087 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Col1a1P11087 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col1a1P11087 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col1a1P11087 Gm32996-201ENSMUST00000199828 1447 ntBASIC19.82■□□□□ 0.76
Col1a1P11087 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col1a1P11087 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col1a1P11087 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col1a1P11087 Gm11594-201ENSMUST00000122313 162 ntBASIC19.82■□□□□ 0.76
Col1a1P11087 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col1a1P11087 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC19.82■□□□□ 0.76
Col1a1P11087 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col1a1P11087 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col1a1P11087 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col1a1P11087 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col1a1P11087 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col1a1P11087 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col1a1P11087 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Col1a1P11087 Gm11779-201ENSMUST00000118541 368 ntBASIC19.81■□□□□ 0.76
Col1a1P11087 Gm2213-201ENSMUST00000197485 688 ntBASIC19.81■□□□□ 0.76
Col1a1P11087 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Col1a1P11087 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col1a1P11087 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col1a1P11087 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col1a1P11087 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col1a1P11087 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Col1a1P11087 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Col1a1P11087 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col1a1P11087 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Col1a1P11087 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col1a1P11087 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC19.8■□□□□ 0.76
Col1a1P11087 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Col1a1P11087 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col1a1P11087 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC19.8■□□□□ 0.76
Col1a1P11087 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col1a1P11087 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col1a1P11087 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col1a1P11087 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col1a1P11087 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Col1a1P11087 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC19.8■□□□□ 0.76
Col1a1P11087 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col1a1P11087 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Col1a1P11087 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col1a1P11087 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col1a1P11087 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Col1a1P11087 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC19.79■□□□□ 0.76
Col1a1P11087 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC19.79■□□□□ 0.76
Col1a1P11087 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Col1a1P11087 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC19.79■□□□□ 0.76
Col1a1P11087 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Col1a1P11087 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
Col1a1P11087 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC19.79■□□□□ 0.76
Col1a1P11087 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Col1a1P11087 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col1a1P11087 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col1a1P11087 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col1a1P11087 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Col1a1P11087 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col1a1P11087 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC19.78■□□□□ 0.76
Col1a1P11087 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col1a1P11087 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col1a1P11087 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col1a1P11087 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms