Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC20.23■□□□□ 0.83
Col3a1P08121 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Col3a1P08121 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Col3a1P08121 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Col3a1P08121 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Col3a1P08121 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC20.22■□□□□ 0.83
Col3a1P08121 AC133598.3-202ENSMUST00000224219 531 ntBASIC20.22■□□□□ 0.83
Col3a1P08121 AC107711.5-202ENSMUST00000226429 702 ntBASIC20.22■□□□□ 0.83
Col3a1P08121 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col3a1P08121 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col3a1P08121 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC20.21■□□□□ 0.83
Col3a1P08121 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col3a1P08121 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col3a1P08121 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col3a1P08121 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col3a1P08121 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Col3a1P08121 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC20.21■□□□□ 0.83
Col3a1P08121 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC20.21■□□□□ 0.83
Col3a1P08121 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col3a1P08121 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC20.21■□□□□ 0.83
Col3a1P08121 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col3a1P08121 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col3a1P08121 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col3a1P08121 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC20.2■□□□□ 0.83
Col3a1P08121 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col3a1P08121 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Col3a1P08121 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col3a1P08121 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
Col3a1P08121 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col3a1P08121 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col3a1P08121 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Col3a1P08121 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC20.2■□□□□ 0.82
Col3a1P08121 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Col3a1P08121 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col3a1P08121 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col3a1P08121 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col3a1P08121 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC20.2■□□□□ 0.82
Col3a1P08121 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col3a1P08121 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col3a1P08121 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col3a1P08121 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col3a1P08121 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col3a1P08121 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col3a1P08121 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col3a1P08121 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC20.19■□□□□ 0.82
Col3a1P08121 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col3a1P08121 Gm16499-203ENSMUST00000204633 2177 ntBASIC20.19■□□□□ 0.82
Col3a1P08121 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC20.19■□□□□ 0.82
Col3a1P08121 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col3a1P08121 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col3a1P08121 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Col3a1P08121 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col3a1P08121 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col3a1P08121 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Col3a1P08121 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
Col3a1P08121 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col3a1P08121 Gm13312-201ENSMUST00000119631 718 ntBASIC20.18■□□□□ 0.82
Col3a1P08121 Gm27459-201ENSMUST00000184860 107 ntBASIC20.18■□□□□ 0.82
Col3a1P08121 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col3a1P08121 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col3a1P08121 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col3a1P08121 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col3a1P08121 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC20.18■□□□□ 0.82
Col3a1P08121 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col3a1P08121 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col3a1P08121 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col3a1P08121 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col3a1P08121 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Col3a1P08121 Gm45203-201ENSMUST00000206384 1831 ntBASIC20.18■□□□□ 0.82
Col3a1P08121 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col3a1P08121 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col3a1P08121 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Col3a1P08121 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC20.18■□□□□ 0.82
Col3a1P08121 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Col3a1P08121 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC20.18■□□□□ 0.82
Col3a1P08121 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC20.18■□□□□ 0.82
Col3a1P08121 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col3a1P08121 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Col3a1P08121 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col3a1P08121 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Col3a1P08121 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col3a1P08121 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col3a1P08121 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC20.17■□□□□ 0.82
Col3a1P08121 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms