Protein–RNA interactions for Protein: O55017

Cacna1b, Voltage-dependent N-type calcium channel subunit alpha-1B, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1bO55017 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cacna1bO55017 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cacna1bO55017 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cacna1bO55017 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC16.32■□□□□ 0.2
Cacna1bO55017 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Cacna1bO55017 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cacna1bO55017 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cacna1bO55017 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC16.32■□□□□ 0.2
Cacna1bO55017 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cacna1bO55017 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cacna1bO55017 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cacna1bO55017 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cacna1bO55017 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cacna1bO55017 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cacna1bO55017 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC16.31■□□□□ 0.2
Cacna1bO55017 Gm2756-201ENSMUST00000195851 400 ntBASIC16.31■□□□□ 0.2
Cacna1bO55017 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cacna1bO55017 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cacna1bO55017 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cacna1bO55017 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cacna1bO55017 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cacna1bO55017 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cacna1bO55017 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cacna1bO55017 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cacna1bO55017 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cacna1bO55017 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Cacna1bO55017 Gm12350-201ENSMUST00000121208 462 ntBASIC16.31■□□□□ 0.2
Cacna1bO55017 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC16.31■□□□□ 0.2
Cacna1bO55017 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cacna1bO55017 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cacna1bO55017 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Cacna1bO55017 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cacna1bO55017 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC16.3■□□□□ 0.2
Cacna1bO55017 Gm43575-201ENSMUST00000196420 516 ntBASIC16.3■□□□□ 0.2
Cacna1bO55017 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Cacna1bO55017 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cacna1bO55017 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cacna1bO55017 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Cacna1bO55017 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cacna1bO55017 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cacna1bO55017 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC16.29■□□□□ 0.2
Cacna1bO55017 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cacna1bO55017 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
Cacna1bO55017 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC16.29■□□□□ 0.2
Cacna1bO55017 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cacna1bO55017 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cacna1bO55017 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cacna1bO55017 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cacna1bO55017 Gm27702-201ENSMUST00000184512 56 ntBASIC16.29■□□□□ 0.2
Cacna1bO55017 Gm13830-205ENSMUST00000201195 1155 ntBASIC16.29■□□□□ 0.2
Cacna1bO55017 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Cacna1bO55017 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cacna1bO55017 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cacna1bO55017 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cacna1bO55017 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cacna1bO55017 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cacna1bO55017 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cacna1bO55017 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC16.28■□□□□ 0.2
Cacna1bO55017 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC16.28■□□□□ 0.2
Cacna1bO55017 Gm10060-201ENSMUST00000212002 111 ntBASIC16.28■□□□□ 0.2
Cacna1bO55017 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cacna1bO55017 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cacna1bO55017 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cacna1bO55017 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cacna1bO55017 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cacna1bO55017 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Cacna1bO55017 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC16.28■□□□□ 0.2
Cacna1bO55017 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC16.28■□□□□ 0.2
Cacna1bO55017 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC16.28■□□□□ 0.2
Cacna1bO55017 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cacna1bO55017 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cacna1bO55017 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
Cacna1bO55017 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Cacna1bO55017 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cacna1bO55017 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cacna1bO55017 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cacna1bO55017 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cacna1bO55017 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Cacna1bO55017 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
Cacna1bO55017 Gm1401-201ENSMUST00000122048 772 ntBASIC16.27■□□□□ 0.2
Cacna1bO55017 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cacna1bO55017 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cacna1bO55017 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cacna1bO55017 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms