Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
Smarce1O54941 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Smarce1O54941 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarce1O54941 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Smarce1O54941 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarce1O54941 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarce1O54941 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarce1O54941 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Smarce1O54941 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Smarce1O54941 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarce1O54941 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarce1O54941 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarce1O54941 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarce1O54941 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarce1O54941 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC20.17■□□□□ 0.82
Smarce1O54941 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC20.17■□□□□ 0.82
Smarce1O54941 AC107711.5-202ENSMUST00000226429 702 ntBASIC20.17■□□□□ 0.82
Smarce1O54941 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarce1O54941 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
Smarce1O54941 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarce1O54941 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Smarce1O54941 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarce1O54941 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarce1O54941 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC20.16■□□□□ 0.82
Smarce1O54941 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Smarce1O54941 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarce1O54941 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarce1O54941 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarce1O54941 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarce1O54941 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarce1O54941 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC20.16■□□□□ 0.82
Smarce1O54941 Gm20049-201ENSMUST00000219950 730 ntBASIC20.16■□□□□ 0.82
Smarce1O54941 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarce1O54941 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarce1O54941 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarce1O54941 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarce1O54941 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Smarce1O54941 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarce1O54941 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarce1O54941 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarce1O54941 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
Smarce1O54941 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smarce1O54941 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Smarce1O54941 Gm37166-201ENSMUST00000195473 2474 ntBASIC20.15■□□□□ 0.82
Smarce1O54941 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
Smarce1O54941 Gm9694-201ENSMUST00000193347 1189 ntBASIC20.15■□□□□ 0.82
Smarce1O54941 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smarce1O54941 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smarce1O54941 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smarce1O54941 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Smarce1O54941 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smarce1O54941 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smarce1O54941 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Smarce1O54941 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smarce1O54941 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smarce1O54941 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smarce1O54941 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smarce1O54941 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Smarce1O54941 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC20.14■□□□□ 0.82
Smarce1O54941 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Smarce1O54941 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Smarce1O54941 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Smarce1O54941 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Smarce1O54941 H2-K2-201ENSMUST00000174250 1049 ntBASIC20.14■□□□□ 0.81
Smarce1O54941 Gm37025-201ENSMUST00000195159 829 ntBASIC20.14■□□□□ 0.81
Smarce1O54941 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC20.14■□□□□ 0.81
Smarce1O54941 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
Smarce1O54941 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Smarce1O54941 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Smarce1O54941 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Smarce1O54941 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Smarce1O54941 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smarce1O54941 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smarce1O54941 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smarce1O54941 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Smarce1O54941 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Smarce1O54941 Gm17661-201ENSMUST00000170317 270 ntBASIC20.13■□□□□ 0.81
Smarce1O54941 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smarce1O54941 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Smarce1O54941 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Smarce1O54941 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smarce1O54941 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC20.13■□□□□ 0.81
Smarce1O54941 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smarce1O54941 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smarce1O54941 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC20.12■□□□□ 0.81
Smarce1O54941 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Smarce1O54941 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Smarce1O54941 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smarce1O54941 Nrn1-203ENSMUST00000223611 1443 ntBASIC20.12■□□□□ 0.81
Smarce1O54941 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smarce1O54941 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smarce1O54941 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Smarce1O54941 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smarce1O54941 Gm12441-201ENSMUST00000121806 588 ntBASIC20.12■□□□□ 0.81
Smarce1O54941 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC20.12■□□□□ 0.81
Smarce1O54941 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smarce1O54941 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smarce1O54941 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smarce1O54941 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Smarce1O54941 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms