Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Gm37805-201ENSMUST00000192612 1094 ntBASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Arhgef33-211ENSMUST00000225658 473 ntBASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Pcdhgb8A0A140LI48 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
Pcdhgb8A0A140LI48 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Pcdhgb8A0A140LI48 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Pcdhgb8A0A140LI48 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Gm10698-201ENSMUST00000182663 604 ntBASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Alkbh1-212ENSMUST00000185301 408 ntBASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Gm38285-201ENSMUST00000192928 922 ntBASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Pcdhgb8A0A140LI48 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Gm37374-201ENSMUST00000194954 1829 ntBASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Gm16401-202ENSMUST00000197463 2074 ntBASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Gm10138-203ENSMUST00000206952 366 ntBASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Pcdhgb8A0A140LI48 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Pcdhgb8A0A140LI48 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Pcdhgb8A0A140LI48 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC15.3■□□□□ 0.04
Pcdhgb8A0A140LI48 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC15.3■□□□□ 0.04
Pcdhgb8A0A140LI48 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Pcdhgb8A0A140LI48 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC15.3■□□□□ 0.04
Pcdhgb8A0A140LI48 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Pcdhgb8A0A140LI48 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC15.3■□□□□ 0.04
Pcdhgb8A0A140LI48 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Pcdhgb8A0A140LI48 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Pcdhgb8A0A140LI48 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Pcdhgb8A0A140LI48 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Pcdhgb8A0A140LI48 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Pcdhgb8A0A140LI48 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC15.3■□□□□ 0.04
Pcdhgb8A0A140LI48 AC069562.2-201ENSMUST00000224644 2146 ntBASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 88.4 ms