Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPS3AP38-201ENST00000435889 763 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 LINC00328-2P-201ENST00000436585 219 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 GAPDHP23-201ENST00000444823 993 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 REG1CP-206ENST00000447469 496 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 snoU13.29-201ENST00000459370 104 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 AC005017.1-201ENST00000482002 490 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 ACTR6P1-201ENST00000514311 1104 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 IGKV2-19-201ENST00000518132 283 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 AC023968.1-201ENST00000560719 475 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 AC009779.8-202ENST00000607990 932 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 uc_338.26-201ENST00000612659 160 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 TEX41-293ENST00000630451 690 ntTSL 5 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 AC004656.1-201ENST00000568479 4951 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 RNF19BPY-201ENST00000458209 1550 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
NKX3-1Q99801 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
NKX3-1Q99801 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
NKX3-1Q99801 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
NKX3-1Q99801 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
NKX3-1Q99801 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC005261.2-201ENST00000593427 4258 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC120036.2-201ENST00000509729 1474 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 RN7SKP250-201ENST00000363924 321 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AL157702.1-201ENST00000398764 426 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 SNORA11.5-201ENST00000408163 128 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 RN7SKP121-201ENST00000410842 305 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC002127.1-201ENST00000421305 225 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 OR6R1P-201ENST00000431838 940 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 AL590399.4-201ENST00000436561 601 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
NKX3-1Q99801 PFN2-209ENST00000481275 560 ntTSL 4 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 RPS27P20-201ENST00000492051 246 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC010343.2-201ENST00000510162 224 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 RN7SKP183-201ENST00000517169 324 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 RPL3P13-201ENST00000550415 216 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC011270.1-201ENST00000558606 583 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC245128.3-201ENST00000594721 748 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AL354696.1-201ENST00000614652 497 ntBASIC5.29□□□□□ -1.56
NKX3-1Q99801 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms