Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 OR7E1P-201ENST00000533891 958 ntBASIC6.33□□□□□ -1.4
MSX2P35548 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC6.33□□□□□ -1.4
MSX2P35548 AC092868.2-201ENST00000558749 497 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX2P35548 AL356801.1-201ENST00000559320 294 ntBASIC6.33□□□□□ -1.4
MSX2P35548 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX2P35548 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX2P35548 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX2P35548 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX2P35548 AP005136.1-201ENST00000579765 429 ntBASIC6.33□□□□□ -1.4
MSX2P35548 AP000919.1-202ENST00000581139 1264 ntBASIC6.33□□□□□ -1.4
MSX2P35548 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX2P35548 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC6.33□□□□□ -1.4
MSX2P35548 AC009303.2-206ENST00000588042 786 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSX2P35548 AC010503.3-201ENST00000594355 540 ntBASIC6.33□□□□□ -1.4
MSX2P35548 VN1R78P-201ENST00000597393 564 ntBASIC6.33□□□□□ -1.4
MSX2P35548 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX2P35548 AP000436.1-201ENST00000605239 800 ntBASIC6.33□□□□□ -1.4
MSX2P35548 AL591686.2-201ENST00000608241 475 ntTSL 4 BASIC6.33□□□□□ -1.4
MSX2P35548 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC6.33□□□□□ -1.4
MSX2P35548 AL139407.1-201ENST00000613826 1175 ntBASIC6.33□□□□□ -1.4
MSX2P35548 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX2P35548 SNORA16A-202ENST00000628458 135 ntBASIC6.33□□□□□ -1.4
MSX2P35548 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 FGL2-202ENST00000637771 989 ntBASIC6.33□□□□□ -1.4
MSX2P35548 TTC33-207ENST00000637375 1824 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 AC010329.1-201ENST00000593903 8328 ntBASIC6.33□□□□□ -1.4
MSX2P35548 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC6.33□□□□□ -1.4
MSX2P35548 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSX2P35548 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 CUL4AP1-201ENST00000514750 1863 ntBASIC6.32□□□□□ -1.4
MSX2P35548 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSX2P35548 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
MSX2P35548 AC005725.1-201ENST00000577346 2607 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AC087565.3-202ENST00000642085 1603 ntBASIC6.32□□□□□ -1.4
MSX2P35548 DLEU2L-201ENST00000371086 3555 ntBASIC6.32□□□□□ -1.4
MSX2P35548 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSX2P35548 SNX18P3-202ENST00000565670 1750 ntBASIC6.32□□□□□ -1.4
MSX2P35548 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
MSX2P35548 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC6.32□□□□□ -1.4
MSX2P35548 RNU6-316P-201ENST00000391027 107 ntBASIC6.32□□□□□ -1.4
MSX2P35548 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSX2P35548 HMGB3P19-201ENST00000403971 560 ntBASIC6.32□□□□□ -1.4
MSX2P35548 MIR1302-8-201ENST00000408342 128 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX2P35548 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX2P35548 HIGD1AP4-201ENST00000430194 280 ntBASIC6.32□□□□□ -1.4
MSX2P35548 LINC00160-201ENST00000430635 693 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC6.32□□□□□ -1.4
MSX2P35548 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX2P35548 AL358794.1-201ENST00000445689 381 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AC044797.1-201ENST00000445744 679 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 NPM1P19-201ENST00000450070 712 ntBASIC6.32□□□□□ -1.4
MSX2P35548 MTND1P27-201ENST00000451117 902 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AC092155.2-201ENST00000454675 477 ntBASIC6.32□□□□□ -1.4
MSX2P35548 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX2P35548 TPT1P1-201ENST00000458495 518 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AC078788.2-201ENST00000462300 382 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX2P35548 SETP6-201ENST00000479329 568 ntBASIC6.32□□□□□ -1.4
MSX2P35548 NPM1P29-201ENST00000483112 803 ntBASIC6.32□□□□□ -1.4
MSX2P35548 EIF4E2P2-201ENST00000492033 736 ntBASIC6.32□□□□□ -1.4
MSX2P35548 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX2P35548 OR5M4P-201ENST00000529436 925 ntBASIC6.32□□□□□ -1.4
MSX2P35548 OR5M6P-201ENST00000530227 937 ntBASIC6.32□□□□□ -1.4
MSX2P35548 ZNF321P-202ENST00000550843 495 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AL031846.1-201ENST00000560933 314 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX2P35548 AC009094.1-201ENST00000564443 426 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AC109446.2-201ENST00000567872 497 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 AC027455.1-201ENST00000574104 594 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AC027281.1-201ENST00000574178 758 ntBASIC6.32□□□□□ -1.4
MSX2P35548 OOSP1P2-201ENST00000579644 351 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 AC011921.2-201ENST00000589465 152 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AC009950.1-209ENST00000595586 777 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 MAGEB5-201ENST00000602297 1216 ntAPPRIS P1 TSL 3 BASIC6.32□□□□□ -1.4
MSX2P35548 Z99497.2-201ENST00000603634 310 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AL157899.1-201ENST00000604110 936 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AP002802.2-201ENST00000605877 235 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AC107952.2-201ENST00000606048 486 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AC108865.2-201ENST00000606881 432 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AL596325.2-201ENST00000609669 505 ntTSL 3 BASIC6.32□□□□□ -1.4
MSX2P35548 AL161420.1-201ENST00000619393 264 ntBASIC6.32□□□□□ -1.4
MSX2P35548 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 AC105105.5-201ENST00000622635 1294 ntBASIC6.32□□□□□ -1.4
MSX2P35548 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 LINC01427-203ENST00000635277 781 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 PRPS1L1-202ENST00000638645 957 ntAPPRIS P2 BASIC6.32□□□□□ -1.4
MSX2P35548 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms