Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RPL7AP14-201ENST00000424041 802 ntBASIC5.69□□□□□ -1.5
SDC1P18827 AC096632.2-201ENST00000438139 1239 ntBASIC5.69□□□□□ -1.5
SDC1P18827 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.69□□□□□ -1.5
SDC1P18827 AL603882.1-201ENST00000463059 681 ntBASIC5.69□□□□□ -1.5
SDC1P18827 AC083795.1-201ENST00000491760 320 ntBASIC5.69□□□□□ -1.5
SDC1P18827 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC5.69□□□□□ -1.5
SDC1P18827 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.69□□□□□ -1.5
SDC1P18827 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC5.69□□□□□ -1.5
SDC1P18827 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC5.69□□□□□ -1.5
SDC1P18827 MT1CP-201ENST00000567054 174 ntBASIC5.69□□□□□ -1.5
SDC1P18827 AC004232.2-201ENST00000574245 821 ntBASIC5.69□□□□□ -1.5
SDC1P18827 MIR4420-201ENST00000583944 77 ntBASIC5.69□□□□□ -1.5
SDC1P18827 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.69□□□□□ -1.5
SDC1P18827 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.69□□□□□ -1.5
SDC1P18827 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.69□□□□□ -1.5
SDC1P18827 AC093388.1-201ENST00000609166 430 ntBASIC5.69□□□□□ -1.5
SDC1P18827 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC5.69□□□□□ -1.5
SDC1P18827 TEX41-271ENST00000628213 993 ntTSL 5 BASIC5.69□□□□□ -1.5
SDC1P18827 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC5.69□□□□□ -1.5
SDC1P18827 AC099654.15-201ENST00000639802 509 ntBASIC5.69□□□□□ -1.5
SDC1P18827 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 MTCO1P46-201ENST00000451639 1491 ntBASIC5.69□□□□□ -1.5
SDC1P18827 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.69□□□□□ -1.5
SDC1P18827 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
SDC1P18827 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
SDC1P18827 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SDC1P18827 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.68□□□□□ -1.5
SDC1P18827 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SDC1P18827 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SDC1P18827 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SDC1P18827 AC027575.3-201ENST00000583058 2747 ntBASIC5.68□□□□□ -1.5
SDC1P18827 RNU1-134P-201ENST00000362935 165 ntBASIC5.68□□□□□ -1.5
SDC1P18827 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
SDC1P18827 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC5.68□□□□□ -1.5
SDC1P18827 RPL7AP51-201ENST00000422016 760 ntBASIC5.68□□□□□ -1.5
SDC1P18827 AC092865.3-201ENST00000425390 1026 ntBASIC5.68□□□□□ -1.5
SDC1P18827 AC099782.1-201ENST00000425889 474 ntBASIC5.68□□□□□ -1.5
SDC1P18827 AC099677.3-201ENST00000427081 395 ntBASIC5.68□□□□□ -1.5
SDC1P18827 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SDC1P18827 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.68□□□□□ -1.5
SDC1P18827 AL356121.1-201ENST00000442911 156 ntBASIC5.68□□□□□ -1.5
SDC1P18827 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC5.68□□□□□ -1.5
SDC1P18827 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.68□□□□□ -1.5
SDC1P18827 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SDC1P18827 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.68□□□□□ -1.5
SDC1P18827 AP001000.1-201ENST00000526843 742 ntBASIC5.68□□□□□ -1.5
SDC1P18827 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.68□□□□□ -1.5
SDC1P18827 AC090424.1-201ENST00000535243 736 ntBASIC5.68□□□□□ -1.5
SDC1P18827 AC007346.2-201ENST00000564816 892 ntBASIC5.68□□□□□ -1.5
SDC1P18827 MRPS21P8-201ENST00000569196 235 ntBASIC5.68□□□□□ -1.5
SDC1P18827 STARD6-202ENST00000577499 696 ntTSL 2 BASIC5.68□□□□□ -1.5
SDC1P18827 AP001357.1-201ENST00000586304 1053 ntBASIC5.68□□□□□ -1.5
SDC1P18827 AC006115.2-201ENST00000596823 202 ntBASIC5.68□□□□□ -1.5
SDC1P18827 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC5.68□□□□□ -1.5
SDC1P18827 OSTC-205ENST00000613215 876 ntTSL 2 BASIC5.68□□□□□ -1.5
SDC1P18827 AC015819.1-201ENST00000613588 663 ntBASIC5.68□□□□□ -1.5
SDC1P18827 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC5.68□□□□□ -1.5
SDC1P18827 5S_rRNA.29-201ENST00000641250 107 ntBASIC5.68□□□□□ -1.5
SDC1P18827 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.68□□□□□ -1.5
SDC1P18827 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SDC1P18827 MSL3P1-202ENST00000440028 1468 ntBASIC5.68□□□□□ -1.5
SDC1P18827 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
SDC1P18827 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SDC1P18827 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
SDC1P18827 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.68□□□□□ -1.5
SDC1P18827 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
SDC1P18827 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.68□□□□□ -1.5
SDC1P18827 RBMY1HP-201ENST00000382759 1389 ntBASIC5.67□□□□□ -1.5
SDC1P18827 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC5.67□□□□□ -1.5
SDC1P18827 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SDC1P18827 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.67□□□□□ -1.5
SDC1P18827 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SDC1P18827 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SDC1P18827 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SDC1P18827 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
SDC1P18827 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
SDC1P18827 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SDC1P18827 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC5.67□□□□□ -1.5
SDC1P18827 RN7SKP146-201ENST00000410242 334 ntBASIC5.67□□□□□ -1.5
SDC1P18827 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.67□□□□□ -1.5
SDC1P18827 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.67□□□□□ -1.5
SDC1P18827 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.67□□□□□ -1.5
SDC1P18827 AL663074.2-201ENST00000440621 479 ntBASIC5.67□□□□□ -1.5
SDC1P18827 RPSAP40-201ENST00000442343 891 ntBASIC5.67□□□□□ -1.5
SDC1P18827 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC5.67□□□□□ -1.5
SDC1P18827 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC5.67□□□□□ -1.5
SDC1P18827 RSU1P1-201ENST00000453416 441 ntBASIC5.67□□□□□ -1.5
SDC1P18827 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.67□□□□□ -1.5
SDC1P18827 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC5.67□□□□□ -1.5
SDC1P18827 PFN1P6-201ENST00000476786 399 ntBASIC5.67□□□□□ -1.5
SDC1P18827 AP002453.1-201ENST00000492327 668 ntBASIC5.67□□□□□ -1.5
SDC1P18827 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.67□□□□□ -1.5
SDC1P18827 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms