Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 DUXAP8-207ENST00000456786 622 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 AC005412.2-201ENST00000492004 341 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 RPL24-206ENST00000495401 478 ntTSL 2 BASIC6.72□□□□□ -1.33
USP39Q53GS9 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC6.72□□□□□ -1.33
USP39Q53GS9 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC6.72□□□□□ -1.33
USP39Q53GS9 AC108103.1-201ENST00000511286 446 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 SNORD116-30-201ENST00000516468 85 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC6.72□□□□□ -1.33
USP39Q53GS9 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
USP39Q53GS9 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC6.72□□□□□ -1.33
USP39Q53GS9 MTATP6P15-201ENST00000527233 835 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC6.72□□□□□ -1.33
USP39Q53GS9 RPL41P2-201ENST00000544920 409 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 RPL3P13-201ENST00000550415 216 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC6.72□□□□□ -1.33
USP39Q53GS9 AC002519.2-203ENST00000567043 837 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 SNORA70D-201ENST00000578836 135 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 AC087575.1-201ENST00000585087 229 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 AL589863.1-201ENST00000595383 631 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 IGKV2OR2-1-201ENST00000605129 304 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 BX323046.1-201ENST00000610145 535 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 AL135999.3-201ENST00000610501 812 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 DUXAP10-204ENST00000612052 616 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC6.72□□□□□ -1.33
USP39Q53GS9 AC026951.2-201ENST00000613847 241 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 MTCO1P1-201ENST00000624263 1081 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.72□□□□□ -1.33
USP39Q53GS9 AC103703.1-201ENST00000634783 663 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC6.72□□□□□ -1.33
USP39Q53GS9 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC6.72□□□□□ -1.33
USP39Q53GS9 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
USP39Q53GS9 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
USP39Q53GS9 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
USP39Q53GS9 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
USP39Q53GS9 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC6.72□□□□□ -1.33
USP39Q53GS9 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
USP39Q53GS9 AL137058.3-201ENST00000624531 3099 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.72□□□□□ -1.33
USP39Q53GS9 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
USP39Q53GS9 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
USP39Q53GS9 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
USP39Q53GS9 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC6.71□□□□□ -1.33
USP39Q53GS9 NUSAP1-202ENST00000414849 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.33
USP39Q53GS9 AC090220.1-201ENST00000593078 1699 ntBASIC6.71□□□□□ -1.33
USP39Q53GS9 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC6.71□□□□□ -1.33
USP39Q53GS9 MAPK10-344ENST00000641718 3746 ntBASIC6.71□□□□□ -1.33
USP39Q53GS9 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
USP39Q53GS9 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 AC068733.2-201ENST00000605434 1418 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
USP39Q53GS9 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.71□□□□□ -1.34
USP39Q53GS9 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC6.71□□□□□ -1.34
USP39Q53GS9 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC6.71□□□□□ -1.34
USP39Q53GS9 RNU6-1000P-201ENST00000391066 106 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 AC069282.1-201ENST00000411911 526 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC6.71□□□□□ -1.34
USP39Q53GS9 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC6.71□□□□□ -1.34
USP39Q53GS9 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
USP39Q53GS9 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC6.71□□□□□ -1.34
USP39Q53GS9 AC096638.2-201ENST00000434965 711 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 ATP5C1P1-201ENST00000441945 895 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 OR2AF1P-201ENST00000454899 889 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC6.71□□□□□ -1.34
USP39Q53GS9 MTND2P30-201ENST00000456663 382 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC6.71□□□□□ -1.34
USP39Q53GS9 AC094085.1-201ENST00000468914 584 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC6.71□□□□□ -1.34
USP39Q53GS9 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC6.71□□□□□ -1.34
USP39Q53GS9 AC112673.1-201ENST00000513168 575 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC6.71□□□□□ -1.34
USP39Q53GS9 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
USP39Q53GS9 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC6.71□□□□□ -1.34
USP39Q53GS9 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 GTF2IP11-201ENST00000526931 420 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 UBTFL10-201ENST00000528532 562 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 TRIM51DP-201ENST00000529746 596 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC6.71□□□□□ -1.34
USP39Q53GS9 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC6.71□□□□□ -1.34
USP39Q53GS9 ZKSCAN7P1-201ENST00000543668 673 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC6.71□□□□□ -1.34
USP39Q53GS9 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC6.71□□□□□ -1.34
USP39Q53GS9 AL049844.2-201ENST00000604280 628 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 STARD13-AS-232ENST00000609137 882 ntTSL 5 BASIC6.71□□□□□ -1.34
USP39Q53GS9 AL136097.3-201ENST00000611097 505 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC6.71□□□□□ -1.34
USP39Q53GS9 AC079395.3-201ENST00000615161 484 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 AL355493.4-201ENST00000618530 292 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 AC026585.1-201ENST00000619582 524 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC6.71□□□□□ -1.34
USP39Q53GS9 OR5AC4P-202ENST00000642086 985 ntBASIC6.71□□□□□ -1.34
USP39Q53GS9 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC6.71□□□□□ -1.34
USP39Q53GS9 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.71□□□□□ -1.34
USP39Q53GS9 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms