Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Scn11aQ9R053 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC20.15■□□□□ 0.82
Scn11aQ9R053 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC20.15■□□□□ 0.82
Scn11aQ9R053 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn11aQ9R053 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Scn11aQ9R053 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Scn11aQ9R053 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Scn11aQ9R053 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Scn11aQ9R053 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Scn11aQ9R053 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC20.14■□□□□ 0.81
Scn11aQ9R053 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Scn11aQ9R053 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Scn11aQ9R053 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC20.14■□□□□ 0.81
Scn11aQ9R053 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC20.14■□□□□ 0.81
Scn11aQ9R053 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Scn11aQ9R053 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Scn11aQ9R053 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Scn11aQ9R053 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Scn11aQ9R053 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Scn11aQ9R053 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC20.13■□□□□ 0.81
Scn11aQ9R053 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC20.13■□□□□ 0.81
Scn11aQ9R053 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn11aQ9R053 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Scn11aQ9R053 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn11aQ9R053 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Scn11aQ9R053 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.13■□□□□ 0.81
Scn11aQ9R053 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn11aQ9R053 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn11aQ9R053 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn11aQ9R053 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn11aQ9R053 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Scn11aQ9R053 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC20.13■□□□□ 0.81
Scn11aQ9R053 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn11aQ9R053 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Scn11aQ9R053 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn11aQ9R053 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Scn11aQ9R053 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn11aQ9R053 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn11aQ9R053 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn11aQ9R053 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC20.12■□□□□ 0.81
Scn11aQ9R053 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn11aQ9R053 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn11aQ9R053 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Scn11aQ9R053 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn11aQ9R053 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Scn11aQ9R053 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn11aQ9R053 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Scn11aQ9R053 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
Scn11aQ9R053 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Scn11aQ9R053 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn11aQ9R053 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC20.11■□□□□ 0.81
Scn11aQ9R053 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Scn11aQ9R053 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Scn11aQ9R053 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC20.11■□□□□ 0.81
Scn11aQ9R053 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn11aQ9R053 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn11aQ9R053 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn11aQ9R053 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn11aQ9R053 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn11aQ9R053 Gm16499-203ENSMUST00000204633 2177 ntBASIC20.11■□□□□ 0.81
Scn11aQ9R053 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn11aQ9R053 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Scn11aQ9R053 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC20.11■□□□□ 0.81
Scn11aQ9R053 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Scn11aQ9R053 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Scn11aQ9R053 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Scn11aQ9R053 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Scn11aQ9R053 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Scn11aQ9R053 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Scn11aQ9R053 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC20.1■□□□□ 0.81
Scn11aQ9R053 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC20.1■□□□□ 0.81
Scn11aQ9R053 Gm44832-201ENSMUST00000208849 2303 ntBASIC20.1■□□□□ 0.81
Scn11aQ9R053 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Scn11aQ9R053 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Scn11aQ9R053 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Scn11aQ9R053 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn11aQ9R053 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn11aQ9R053 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn11aQ9R053 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Scn11aQ9R053 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn11aQ9R053 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn11aQ9R053 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn11aQ9R053 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Scn11aQ9R053 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn11aQ9R053 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn11aQ9R053 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn11aQ9R053 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Scn11aQ9R053 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Scn11aQ9R053 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Scn11aQ9R053 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC20.08■□□□□ 0.81
Scn11aQ9R053 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Scn11aQ9R053 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Scn11aQ9R053 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Scn11aQ9R053 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Scn11aQ9R053 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn11aQ9R053 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.8
Scn11aQ9R053 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn11aQ9R053 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn11aQ9R053 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn11aQ9R053 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms