Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cdc40Q9DC48 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Gm27463-201ENSMUST00000183569 57 ntBASIC15.79■□□□□ 0.12
Cdc40Q9DC48 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cdc40Q9DC48 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Gm18959-201ENSMUST00000208954 655 ntBASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC15.78■□□□□ 0.12
Cdc40Q9DC48 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Cdc40Q9DC48 Gm5898-201ENSMUST00000121016 2071 ntBASIC15.77■□□□□ 0.12
Cdc40Q9DC48 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Cdc40Q9DC48 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Cdc40Q9DC48 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Cdc40Q9DC48 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC15.77■□□□□ 0.12
Cdc40Q9DC48 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Cdc40Q9DC48 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Cdc40Q9DC48 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Cdc40Q9DC48 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
Cdc40Q9DC48 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Cdc40Q9DC48 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
Cdc40Q9DC48 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Cdc40Q9DC48 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Cdc40Q9DC48 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.11
Cdc40Q9DC48 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Cdc40Q9DC48 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.11
Cdc40Q9DC48 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Cdc40Q9DC48 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms