Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Gm43808-201ENSMUST00000202534 2065 ntBASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC17.43■□□□□ 0.38
Vps28Q9D1C8 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Vps28Q9D1C8 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Vps28Q9D1C8 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Vps28Q9D1C8 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
Vps28Q9D1C8 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Vps28Q9D1C8 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Vps28Q9D1C8 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC17.43■□□□□ 0.38
Vps28Q9D1C8 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC17.43■□□□□ 0.38
Vps28Q9D1C8 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
Vps28Q9D1C8 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Vps28Q9D1C8 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Vps28Q9D1C8 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Vps28Q9D1C8 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Vps28Q9D1C8 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Gm43294-201ENSMUST00000202850 2490 ntBASIC17.42■□□□□ 0.38
Vps28Q9D1C8 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Gm16061-201ENSMUST00000122167 857 ntBASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Vps28Q9D1C8 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Gm7977-201ENSMUST00000193787 748 ntBASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Vps28Q9D1C8 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps28Q9D1C8 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Vps28Q9D1C8 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Vps28Q9D1C8 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps28Q9D1C8 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC17.39■□□□□ 0.37
Vps28Q9D1C8 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Vps28Q9D1C8 Gm13474-201ENSMUST00000122466 815 ntBASIC17.39■□□□□ 0.37
Vps28Q9D1C8 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps28Q9D1C8 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Vps28Q9D1C8 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 120.1 ms