Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx56Q9D0R4 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx56Q9D0R4 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx56Q9D0R4 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx56Q9D0R4 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx56Q9D0R4 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx56Q9D0R4 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC17.87■□□□□ 0.45
Ddx56Q9D0R4 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Ddx56Q9D0R4 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx56Q9D0R4 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx56Q9D0R4 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC17.87■□□□□ 0.45
Ddx56Q9D0R4 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx56Q9D0R4 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx56Q9D0R4 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx56Q9D0R4 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx56Q9D0R4 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx56Q9D0R4 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Ddx56Q9D0R4 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx56Q9D0R4 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx56Q9D0R4 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx56Q9D0R4 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx56Q9D0R4 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx56Q9D0R4 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC17.86■□□□□ 0.45
Ddx56Q9D0R4 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx56Q9D0R4 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx56Q9D0R4 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Ddx56Q9D0R4 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Ddx56Q9D0R4 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx56Q9D0R4 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx56Q9D0R4 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx56Q9D0R4 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Ddx56Q9D0R4 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ddx56Q9D0R4 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Ddx56Q9D0R4 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ddx56Q9D0R4 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 AC135963.1-201ENSMUST00000211640 717 ntBASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx56Q9D0R4 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms