Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Gm10517-202ENSMUST00000192970 758 ntBASIC16.59■□□□□ 0.25
Msh4Q99MT2 Gm21814-202ENSMUST00000203277 873 ntBASIC16.59■□□□□ 0.25
Msh4Q99MT2 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC16.59■□□□□ 0.25
Msh4Q99MT2 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Msh4Q99MT2 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Msh4Q99MT2 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Msh4Q99MT2 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Msh4Q99MT2 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
Msh4Q99MT2 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Msh4Q99MT2 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC16.58■□□□□ 0.25
Msh4Q99MT2 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Msh4Q99MT2 Gm13401-201ENSMUST00000117074 291 ntBASIC16.58■□□□□ 0.24
Msh4Q99MT2 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC16.58■□□□□ 0.24
Msh4Q99MT2 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Msh4Q99MT2 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Msh4Q99MT2 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
Msh4Q99MT2 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Msh4Q99MT2 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Msh4Q99MT2 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Msh4Q99MT2 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Msh4Q99MT2 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Msh4Q99MT2 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Msh4Q99MT2 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msh4Q99MT2 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Otx2os1-204ENSMUST00000227221 751 ntBASIC16.57■□□□□ 0.24
Msh4Q99MT2 Odf3b-204ENSMUST00000227834 930 ntBASIC16.57■□□□□ 0.24
Msh4Q99MT2 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msh4Q99MT2 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msh4Q99MT2 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC16.56■□□□□ 0.24
Msh4Q99MT2 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Krtap5-1-202ENSMUST00000188274 742 ntBASIC16.56■□□□□ 0.24
Msh4Q99MT2 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msh4Q99MT2 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msh4Q99MT2 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Gm3375-201ENSMUST00000203929 796 ntBASIC16.55■□□□□ 0.24
Msh4Q99MT2 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msh4Q99MT2 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msh4Q99MT2 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Msh4Q99MT2 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms