Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Brf1Q8CFK2 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Brf1Q8CFK2 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Brf1Q8CFK2 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Brf1Q8CFK2 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Brf1Q8CFK2 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Brf1Q8CFK2 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Brf1Q8CFK2 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Brf1Q8CFK2 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Brf1Q8CFK2 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Brf1Q8CFK2 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Brf1Q8CFK2 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Brf1Q8CFK2 Gm11620-201ENSMUST00000118770 1845 ntBASIC20.53■□□□□ 0.88
Brf1Q8CFK2 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC20.53■□□□□ 0.88
Brf1Q8CFK2 Gm18958-201ENSMUST00000174258 762 ntBASIC20.53■□□□□ 0.88
Brf1Q8CFK2 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC20.53■□□□□ 0.88
Brf1Q8CFK2 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Brf1Q8CFK2 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Brf1Q8CFK2 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC20.53■□□□□ 0.88
Brf1Q8CFK2 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Brf1Q8CFK2 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Brf1Q8CFK2 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC20.53■□□□□ 0.88
Brf1Q8CFK2 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Brf1Q8CFK2 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Brf1Q8CFK2 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Brf1Q8CFK2 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Brf1Q8CFK2 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Brf1Q8CFK2 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Brf1Q8CFK2 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC20.52■□□□□ 0.88
Brf1Q8CFK2 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC20.52■□□□□ 0.88
Brf1Q8CFK2 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Brf1Q8CFK2 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Brf1Q8CFK2 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Brf1Q8CFK2 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Brf1Q8CFK2 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC20.52■□□□□ 0.88
Brf1Q8CFK2 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC20.52■□□□□ 0.87
Brf1Q8CFK2 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Brf1Q8CFK2 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Brf1Q8CFK2 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Brf1Q8CFK2 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Brf1Q8CFK2 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Brf1Q8CFK2 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Brf1Q8CFK2 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Brf1Q8CFK2 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Brf1Q8CFK2 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Brf1Q8CFK2 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Brf1Q8CFK2 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Brf1Q8CFK2 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Brf1Q8CFK2 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Brf1Q8CFK2 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Gm7889-201ENSMUST00000185591 958 ntBASIC20.49■□□□□ 0.87
Brf1Q8CFK2 AC153881.2-201ENSMUST00000214877 204 ntBASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Gm7370-201ENSMUST00000219471 767 ntBASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Brf1Q8CFK2 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
Brf1Q8CFK2 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Brf1Q8CFK2 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Brf1Q8CFK2 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Brf1Q8CFK2 Krtap5-1-202ENSMUST00000188274 742 ntBASIC20.48■□□□□ 0.87
Brf1Q8CFK2 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Brf1Q8CFK2 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Brf1Q8CFK2 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Brf1Q8CFK2 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Brf1Q8CFK2 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Brf1Q8CFK2 AL590614.2-201ENSMUST00000225374 1937 ntBASIC20.47■□□□□ 0.87
Brf1Q8CFK2 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms