Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc28aQ8CEI3 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc28aQ8CEI3 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc28aQ8CEI3 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Ccdc28aQ8CEI3 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC17.97■□□□□ 0.47
Ccdc28aQ8CEI3 Gm5408-201ENSMUST00000197998 747 ntBASIC17.97■□□□□ 0.47
Ccdc28aQ8CEI3 Gm44672-201ENSMUST00000206944 1098 ntBASIC17.97■□□□□ 0.47
Ccdc28aQ8CEI3 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC17.97■□□□□ 0.47
Ccdc28aQ8CEI3 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc28aQ8CEI3 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc28aQ8CEI3 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc28aQ8CEI3 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc28aQ8CEI3 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc28aQ8CEI3 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc28aQ8CEI3 Gm20628-201ENSMUST00000177363 3215 ntBASIC17.96■□□□□ 0.47
Ccdc28aQ8CEI3 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28aQ8CEI3 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28aQ8CEI3 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Ccdc28aQ8CEI3 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Ccdc28aQ8CEI3 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28aQ8CEI3 Gm45560-201ENSMUST00000211492 1472 ntBASIC17.96■□□□□ 0.47
Ccdc28aQ8CEI3 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Ccdc28aQ8CEI3 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Ccdc28aQ8CEI3 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28aQ8CEI3 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28aQ8CEI3 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28aQ8CEI3 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28aQ8CEI3 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Ccdc28aQ8CEI3 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Ccdc28aQ8CEI3 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
Ccdc28aQ8CEI3 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28aQ8CEI3 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28aQ8CEI3 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC17.93■□□□□ 0.46
Ccdc28aQ8CEI3 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28aQ8CEI3 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28aQ8CEI3 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28aQ8CEI3 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28aQ8CEI3 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28aQ8CEI3 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28aQ8CEI3 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28aQ8CEI3 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28aQ8CEI3 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28aQ8CEI3 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28aQ8CEI3 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28aQ8CEI3 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28aQ8CEI3 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28aQ8CEI3 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28aQ8CEI3 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28aQ8CEI3 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28aQ8CEI3 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28aQ8CEI3 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28aQ8CEI3 Gm42918-201ENSMUST00000199249 1580 ntBASIC17.92■□□□□ 0.46
Ccdc28aQ8CEI3 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC17.92■□□□□ 0.46
Ccdc28aQ8CEI3 Dio3-201ENSMUST00000097228 1449 ntBASIC17.92■□□□□ 0.46
Ccdc28aQ8CEI3 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Ccdc28aQ8CEI3 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28aQ8CEI3 Alkbh1-212ENSMUST00000185301 408 ntBASIC17.92■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms