Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Gm3375-201ENSMUST00000203929 796 ntBASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf3Q8C120 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Sh3rf3Q8C120 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Sh3rf3Q8C120 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Sh3rf3Q8C120 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf3Q8C120 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Sh3rf3Q8C120 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.7■□□□□ 0.42
Sh3rf3Q8C120 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC17.7■□□□□ 0.42
Sh3rf3Q8C120 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf3Q8C120 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Sh3rf3Q8C120 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf3Q8C120 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf3Q8C120 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf3Q8C120 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf3Q8C120 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf3Q8C120 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf3Q8C120 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Sh3rf3Q8C120 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf3Q8C120 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Sh3rf3Q8C120 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf3Q8C120 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf3Q8C120 Gm17661-201ENSMUST00000170317 270 ntBASIC17.69■□□□□ 0.42
Sh3rf3Q8C120 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Sh3rf3Q8C120 Gm9484-201ENSMUST00000195892 1159 ntBASIC17.69■□□□□ 0.42
Sh3rf3Q8C120 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC17.69■□□□□ 0.42
Sh3rf3Q8C120 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Sh3rf3Q8C120 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC17.69■□□□□ 0.42
Sh3rf3Q8C120 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf3Q8C120 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf3Q8C120 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Gm37025-201ENSMUST00000195159 829 ntBASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Gm21814-202ENSMUST00000203277 873 ntBASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC17.68■□□□□ 0.42
Sh3rf3Q8C120 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf3Q8C120 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Sh3rf3Q8C120 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms