Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Cpsf4Q8BQZ5 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cpsf4Q8BQZ5 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cpsf4Q8BQZ5 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Cpsf4Q8BQZ5 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC16.53■□□□□ 0.24
Cpsf4Q8BQZ5 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cpsf4Q8BQZ5 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Cpsf4Q8BQZ5 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Cpsf4Q8BQZ5 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cpsf4Q8BQZ5 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Cpsf4Q8BQZ5 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cpsf4Q8BQZ5 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Cpsf4Q8BQZ5 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cpsf4Q8BQZ5 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC16.52■□□□□ 0.24
Cpsf4Q8BQZ5 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
Cpsf4Q8BQZ5 Gm16042-201ENSMUST00000204813 1247 ntBASIC16.52■□□□□ 0.24
Cpsf4Q8BQZ5 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Cpsf4Q8BQZ5 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cpsf4Q8BQZ5 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cpsf4Q8BQZ5 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cpsf4Q8BQZ5 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cpsf4Q8BQZ5 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.23
Cpsf4Q8BQZ5 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Cpsf4Q8BQZ5 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cpsf4Q8BQZ5 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
Cpsf4Q8BQZ5 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cpsf4Q8BQZ5 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cpsf4Q8BQZ5 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.23
Cpsf4Q8BQZ5 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cpsf4Q8BQZ5 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Cpsf4Q8BQZ5 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Mir8112-201ENSMUST00000184382 131 ntBASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cpsf4Q8BQZ5 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Gm37055-201ENSMUST00000191866 133 ntBASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Gm7712-202ENSMUST00000222331 1510 ntBASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cpsf4Q8BQZ5 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 Gm13401-201ENSMUST00000117074 291 ntBASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cpsf4Q8BQZ5 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms