Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx55Q6ZPL9 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx55Q6ZPL9 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC19.35■□□□□ 0.69
Ddx55Q6ZPL9 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
Ddx55Q6ZPL9 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx55Q6ZPL9 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx55Q6ZPL9 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx55Q6ZPL9 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Ddx55Q6ZPL9 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC19.33■□□□□ 0.69
Ddx55Q6ZPL9 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ddx55Q6ZPL9 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Gm44357-201ENSMUST00000195897 142 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Gm19658-201ENSMUST00000196231 138 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Gm44367-201ENSMUST00000196836 138 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Gm44350-201ENSMUST00000197197 138 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Gm44390-201ENSMUST00000197533 144 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Gm44313-201ENSMUST00000198018 138 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Gm44486-201ENSMUST00000198508 138 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Gm44454-201ENSMUST00000198541 138 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Gm44314-201ENSMUST00000199263 138 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Gm44394-201ENSMUST00000199558 138 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Gm44484-201ENSMUST00000199873 138 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Gm44466-201ENSMUST00000200264 138 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Gm44359-201ENSMUST00000200671 138 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Gm6376-201ENSMUST00000209407 580 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 AC138767.1-201ENSMUST00000222661 415 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Vti1a-206ENSMUST00000225529 1244 ntBASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddx55Q6ZPL9 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Gm27867-201ENSMUST00000184778 125 ntBASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Gm43073-201ENSMUST00000198200 1189 ntBASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx55Q6ZPL9 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Gm15165-201ENSMUST00000118140 502 ntBASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Gm1401-201ENSMUST00000122048 772 ntBASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx55Q6ZPL9 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC19.3■□□□□ 0.68
Ddx55Q6ZPL9 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx55Q6ZPL9 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx55Q6ZPL9 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx55Q6ZPL9 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx55Q6ZPL9 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC19.3■□□□□ 0.68
Ddx55Q6ZPL9 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx55Q6ZPL9 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC19.3■□□□□ 0.68
Ddx55Q6ZPL9 Mir5131-201ENSMUST00000175426 93 ntBASIC19.3■□□□□ 0.68
Ddx55Q6ZPL9 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC19.3■□□□□ 0.68
Ddx55Q6ZPL9 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Ddx55Q6ZPL9 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Ddx55Q6ZPL9 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC19.3■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms