Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Wnt10b-204ENSMUST00000226655 1807 ntBASIC17.16■□□□□ 0.34
Six4Q61321 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Six4Q61321 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Six4Q61321 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Six4Q61321 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Six4Q61321 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Six4Q61321 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Six4Q61321 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Six4Q61321 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Six4Q61321 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
Six4Q61321 Gm16061-201ENSMUST00000122167 857 ntBASIC17.15■□□□□ 0.34
Six4Q61321 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.15■□□□□ 0.34
Six4Q61321 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC17.15■□□□□ 0.34
Six4Q61321 Gm18959-201ENSMUST00000208954 655 ntBASIC17.15■□□□□ 0.34
Six4Q61321 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC17.15■□□□□ 0.34
Six4Q61321 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Six4Q61321 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Six4Q61321 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Six4Q61321 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Six4Q61321 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Six4Q61321 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Six4Q61321 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Six4Q61321 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC17.15■□□□□ 0.34
Six4Q61321 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six4Q61321 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Six4Q61321 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six4Q61321 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
Six4Q61321 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
Six4Q61321 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six4Q61321 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.14■□□□□ 0.33
Six4Q61321 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Six4Q61321 Gm45058-201ENSMUST00000205810 766 ntBASIC17.14■□□□□ 0.33
Six4Q61321 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
Six4Q61321 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Six4Q61321 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Six4Q61321 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Six4Q61321 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Six4Q61321 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC17.14■□□□□ 0.33
Six4Q61321 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six4Q61321 Spsb2-203ENSMUST00000112473 1322 ntBASIC17.14■□□□□ 0.33
Six4Q61321 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six4Q61321 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six4Q61321 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six4Q61321 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six4Q61321 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC17.14■□□□□ 0.33
Six4Q61321 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Six4Q61321 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six4Q61321 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six4Q61321 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six4Q61321 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Six4Q61321 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.13■□□□□ 0.33
Six4Q61321 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Six4Q61321 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six4Q61321 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six4Q61321 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Six4Q61321 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six4Q61321 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Six4Q61321 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Six4Q61321 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Six4Q61321 Mir5130-201ENSMUST00000175160 84 ntBASIC17.13■□□□□ 0.33
Six4Q61321 Gm3272-201ENSMUST00000181181 1229 ntBASIC17.13■□□□□ 0.33
Six4Q61321 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.13■□□□□ 0.33
Six4Q61321 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC17.13■□□□□ 0.33
Six4Q61321 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six4Q61321 Gm10566-201ENSMUST00000086739 996 ntBASIC17.13■□□□□ 0.33
Six4Q61321 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six4Q61321 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six4Q61321 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Six4Q61321 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Six4Q61321 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Six4Q61321 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six4Q61321 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Six4Q61321 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC17.12■□□□□ 0.33
Six4Q61321 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six4Q61321 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six4Q61321 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Six4Q61321 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six4Q61321 Gm16401-202ENSMUST00000197463 2074 ntBASIC17.12■□□□□ 0.33
Six4Q61321 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six4Q61321 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Six4Q61321 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Six4Q61321 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Six4Q61321 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Six4Q61321 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Six4Q61321 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Six4Q61321 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
Six4Q61321 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Six4Q61321 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms