Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col11a1Q61245 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col11a1Q61245 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col11a1Q61245 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col11a1Q61245 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col11a1Q61245 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col11a1Q61245 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Col11a1Q61245 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Col11a1Q61245 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC19.07■□□□□ 0.64
Col11a1Q61245 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Col11a1Q61245 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
Col11a1Q61245 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col11a1Q61245 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col11a1Q61245 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
Col11a1Q61245 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC19.07■□□□□ 0.64
Col11a1Q61245 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC19.07■□□□□ 0.64
Col11a1Q61245 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC19.07■□□□□ 0.64
Col11a1Q61245 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col11a1Q61245 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col11a1Q61245 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col11a1Q61245 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Col11a1Q61245 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.06■□□□□ 0.64
Col11a1Q61245 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col11a1Q61245 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col11a1Q61245 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col11a1Q61245 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Col11a1Q61245 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col11a1Q61245 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Col11a1Q61245 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col11a1Q61245 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC19.06■□□□□ 0.64
Col11a1Q61245 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Col11a1Q61245 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC19.06■□□□□ 0.64
Col11a1Q61245 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Col11a1Q61245 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col11a1Q61245 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col11a1Q61245 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col11a1Q61245 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Col11a1Q61245 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col11a1Q61245 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col11a1Q61245 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC19.05■□□□□ 0.64
Col11a1Q61245 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC19.05■□□□□ 0.64
Col11a1Q61245 Gm24513-201ENSMUST00000174964 138 ntBASIC19.05■□□□□ 0.64
Col11a1Q61245 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC19.05■□□□□ 0.64
Col11a1Q61245 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC19.05■□□□□ 0.64
Col11a1Q61245 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col11a1Q61245 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col11a1Q61245 Gm15590-201ENSMUST00000078419 552 ntBASIC19.05■□□□□ 0.64
Col11a1Q61245 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Col11a1Q61245 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Col11a1Q61245 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col11a1Q61245 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
Col11a1Q61245 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col11a1Q61245 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Col11a1Q61245 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col11a1Q61245 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col11a1Q61245 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC19.04■□□□□ 0.64
Col11a1Q61245 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Col11a1Q61245 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Col11a1Q61245 CT943659.1-201ENSMUST00000215459 326 ntBASIC19.04■□□□□ 0.64
Col11a1Q61245 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col11a1Q61245 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Col11a1Q61245 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col11a1Q61245 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Col11a1Q61245 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col11a1Q61245 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC19.04■□□□□ 0.64
Col11a1Q61245 Gm9727-201ENSMUST00000161387 555 ntBASIC19.04■□□□□ 0.64
Col11a1Q61245 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC19.04■□□□□ 0.64
Col11a1Q61245 AC154222.1-201ENSMUST00000223882 475 ntBASIC19.04■□□□□ 0.64
Col11a1Q61245 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col11a1Q61245 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col11a1Q61245 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col11a1Q61245 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col11a1Q61245 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Col11a1Q61245 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC19.03■□□□□ 0.64
Col11a1Q61245 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col11a1Q61245 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC19.03■□□□□ 0.64
Col11a1Q61245 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col11a1Q61245 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col11a1Q61245 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
Col11a1Q61245 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Col11a1Q61245 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC19.02■□□□□ 0.64
Col11a1Q61245 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Col11a1Q61245 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC19.02■□□□□ 0.64
Col11a1Q61245 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC19.02■□□□□ 0.64
Col11a1Q61245 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col11a1Q61245 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col11a1Q61245 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col11a1Q61245 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col11a1Q61245 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col11a1Q61245 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col11a1Q61245 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col11a1Q61245 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
Col11a1Q61245 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col11a1Q61245 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC19.02■□□□□ 0.63
Col11a1Q61245 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Col11a1Q61245 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC19.02■□□□□ 0.63
Col11a1Q61245 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.63
Col11a1Q61245 Gm12497-201ENSMUST00000138778 237 ntBASIC19.02■□□□□ 0.63
Col11a1Q61245 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Col11a1Q61245 Gm27628-201ENSMUST00000184911 107 ntBASIC19.02■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms